Table 3.

Summary of assembly results

Sample	Total reads	Mapped reads	Mapping rate (%)	Average depth (X)	Coverage at least 1X (%)	Coverage at least 4X (%)
c1	46,999,006	45,302,172	96.39	10.54	99.33	95.68
c2	38,973,908	37,467,504	96.13	9.15	99.19	91.90
c3	38,469,626	37,028,773	96.25	9.11	99.18	91.75
m1	41,960,710	40,458,673	96.42	9.68	99.25	93.58
m2	43,066,082	41,487,247	96.33	9.89	99.29	94.35
m3	43,966,310	42,412,162	96.47	10.12	99.30	94.68
m4	42,200,644	40,611,165	96.23	9.76	99.27	93.83
m5	40,116,850	38,536,371	96.06	9.43	99.21	92.64
m6	44,767,788	42,971,134	95.99	10.86	99.36	96.06
m7	41,919,600	40,377,059	96.32	9.69	99.25	93.50
m8	39,245,026	37,616,558	95.85	9.20	99.21	92.34