Table 1. Putative eSNPs in LD with trait-associated GWAS SNPs.

Chr	eSNP	GWAS SNP	r2	Trait(s)	p-value	Reported Causal Gene(s)	Nearest Gene(s)	Reference(s)
1	rs17315646	rs10489615	0.97	HDL	4x10-9	GALNT2	GALNT2	[6]
		rs2144300	1	HDL	3x10-14			[2]
				TG	8x10-7			[2]
		rs4846914	1	HDL	2x10-13			[1],[4]
				TG	7x10-15			[1]
9	rs2575875	rs4149268	0.96	HDL	1x10-10	ABCA1	ABCA1	[2]
9	rs3847301	rs3890182	0.81	HDL	3x10-10	ABCA1	ABCA1	[1],[6]
		rs3905000	0.81	HDL	9x10-13			[3]
9	rs643531	rs643531	1	HDL	7x10-9	TTC39B	TTC39B	[6]
11	rs12287066	rs12272004	0.83	TC	7x10-7	APOA1-C3-A4-A5	APOA5	[3]
				LDL	5x10-13			[3]
				TG	5x10-13			[3]
		rs12286037	1	TG	1x10-26			[2]
		rs28927680	1	TG	2x10-17			[1]
16	rs1109166	rs12449157	0.94	HDL	2x10-7	GFOD2, LCAT	LCAT, SLC12A4	[6]
19	rs2075650	rs2075650	1	TC	3x10-19	TOMM4, APOE	TOMM4, APOE	[3]

r² is based on HapMap CEU.p-values from the original GWAS studies.