Table 1.
Genomic information of 32 mammal genomes used in this study.
| Classification | Species name | Assembly | Date | Coverage and sequence technology | Contig N50 (× 103) |
|---|---|---|---|---|---|
| Cetartiodactyla | Tursiops truncates (Ttru) | NIST Tur_tru v1 | Dec.2016 | 114.5x Illumina | 44.3 |
| Orcinus orca (Oorc) | Oorc_1.1 | Jan.2013 | 200x Illumina | 70.3 | |
| Neophocaena asiaeorientalis (Neas) | Neophocaena_asiaeorientalis_V1 | Apr.2018 | 106x Illumina | 86 | |
| Delphinapterus leucas (Dleu) | ASM228892v2 | Nov.2017 | 117.0x Illumina | 159.1 | |
| Lipotes vexillifer (Lvex) | Lipotes_vexillifer_v1 | Jul.2013 | 115x Illumina | 31.9 | |
| Physeter macrocephalus (Pmac) | Physeter_macrocephalus-2.0.2 | Sep.2013 | 75x Illumina | 35.3 | |
| Balaenoptera acutorostrata (Bacu) | BalAcu1.0 | Oct.2013 | 92x Illumina | 22.7 | |
| Balaena mysticetus (Bmys) | 1 | Jan.2015 | 150x Illumina | 34.8 | |
| Sus scrofa (Sscr) | Sscrofa11.1 | Feb.2017 | 65.0x PacBio | 48231.3 | |
| Hippopotamus amphibious (Hamp) | ASM299558v1 | Mar.2018 | 55x Illumina | 34 | |
| Carnivora | Ursus maritimus (Umar) | UrsMar_1.0 | May.2014 | 101x Illumina | 46.5 |
| Odobenus rosmarus (Oros) | Oros_1.0 | Jan.2013 | 200x Illumina | 90 | |
| Leptonychotes weddellii (Lwed) | LepWed1.0 | Mar.2013 | 82x Illumina | 23.7 | |
| Ailuropoda melanoleuca (Amel) | AilMel_1.0 | Dec.2009 | 60x Illumina | 39.9 | |
| Chiroptera | Rhinolophus sinicus (Rsin) | ASM188883v1 | Dec.2016 | 146.44x Illumina | 37.8 |
| R. ferrumequinum (Rfer) | ASM46549v1 | Sep.2013 | 17.0x Illumina | 11.7 | |
| Pteronotus parnellii (Ppar) | ASM46540v1 | Sep.2013 | 17.0x Illumina | 9.5 | |
| Myotis lucifugus (Mluc) | Myoluc2.0 | Sep.2010 | 7x Sanger | 64.3 | |
| M. davidii (Mdav) | ASM32734v1 | Dec.2012 | 110x Illumina | 15.2 | |
| M. brandtii (Mbra) | ASM41265v1 | Jun.2013 | 120x Illumina | 23.3 | |
| Miniopterus natalensis (Mnat) | Mnat.v1 | Mar.2016 | 77.0x Illumina | 29.8 | |
| Megaderma lyra (Mlyr) | ASM46534v1 | Sep.2013 | 18.0x Illumina | 7 | |
| Hipposideros armiger (Harm) | ASM189008v1 | Dec.2016 | 218.6x Illumina | 39.9 | |
| Eptesicus fuscus (Efus) | EptFus1.0 | Nov.2012 | 84x Illumina | 21.4 | |
| Eidolon helvum (Ehel) | ASM46528v1 | Sep.2013 | 18.0x Illumina | 12.7 | |
| Rousettus aegyptiacus (Raeg) | Raegyp2.0 | Mar.2016 | 169.2x Illumina; PacBio | 1489 | |
| Pteropus vampyrus (Pvam) | Pvam_2.0 | Dec.2014 | 188.0x Illumina | 21.9 | |
| P. alecto (Pale) | ASM32557v1 | Dec.2013 | 110x Illumina | 31.8 | |
| Euarchontoglires | Nomascus leucogenys (Nleu) | Nleu_3.0 | Dec.2012 | 5.6x Sanger | 35.1 |
| Afrotheria | Trichechus manatus (Tman) | TriManLat1.0 | Jan.2012 | 150x Illumina | 37.8 |
| Loxodonta africana (Lafr) | Loxafr3.0 | Jul.2009 | 7x Sanger, ABI | 69 | |
| Monotremata | Ornithorhynchus anatinus (Oana) | ASM296699v1a | Mar.2018 | 90x PacBio;Illumina | 7578.7 |
| Ornithorhynchus anatinus (Oana) | Ornithorhynchus_anatinus-5.0.1b | Jun. 2011 | 7x shotgun | 11.6 |
Abbreviation of the species is listed in parentheses.
a
This genome was used to identify TRAC, TRBC, and TRGC sequences.
b
This version of genome of platypus was used to identify TRDC and TRMC sequences for comparison to the results from previous studies.