Table 2.

Filtered data statistics in studied strains

Sample	Read length	Number of reads	Total read mapped (%)	Number of bases	Q20 (%)	Q30 (%)	GC (%)	N (ppm)
Bora	147.89	77,385,050	66,076,678 (85.38)	11,444,233,590	95.55	89.13	34.57	4.64
KhanhHoa	147.66	83,870,558	69,606,654 (82.99)	12,384,682,936	95.14	88.21	40.02	4.44

GC% = percentage of G + C in the read; N (ppm) = number of base “N” per million bases; Q20, Q30 = percentage of bases with quality scores (Qphred) higher than 20 or 30, respectively.