Table 5.
Single nucleotide polymorphism/indel genomic distribution in the studied strains
| Region | Number of single nucleotide polymorphisms/indels | Number of genes | |
|---|---|---|---|
| Bora7 strain (%) | KhanhHoa7 strain (%) | ||
| Exonic | 93,079 (70.00%) | 126,381 (71.01%) | 10,781 |
| Intergenic | 19,065 (14.34%) | 24,044 (13.51%) | – |
| Intronic | 17,609 (13.24%) | 23,247 (13.06%) | – |
| Splicing | 41 | 100 (0.06%) | 92 |
| Exonic splicing | 17 | 46 | – |
| Upstream | 325 (0.24%) | 575 (0.32%) | 412 |
| Downstream | 2,807 (2.11%) | 3,539 (1.98%) | 1,685 |
| Up/downstream | 22 | 36 | – |
| Total | 132,965 | 177,968 | – |