Table 3.
Selected proteins from the top 200 scoring proteins in NCBI protein sequence database
| Rank | Accession no. | Protein name | Source organism | Z-score | Best wrap positions |
|---|---|---|---|---|---|
| 5 | 11355115 | Hypothetical protein | Vibrio cholerae | 6.23 | 206–332 |
| 19 | 541803 | Major allergen Cry j I precursor | Cryptomeria japonica | 5.19 | 147–267 |
| 23 | 7468997 | Probable outer membrane protein H | Chlamydia trachomatis | 5.11 | 232–382 |
| 24 | 8978911 | Polymorphic membrane protein B Family | Chlamydophila pneumoniae J138 | 5.11 | 769–904 |
| 32 | 1085822 | Coat protein gp1 | Ectocarpus siliculosus virus | 5.03 | 276–386 |
| 35 | 3255935 | Outer membrane protein 5 | C. pneumoniae | 5.00 | 238–375 |
| 42 | 7465392 | Toxin-like outer membrane protein HP0922 | Helicobacter pylori | 4.94 | 137–263 |
| 45 | 7468853 | Hypothetical protein pmpA | C. trachomatis | 4.92 | 240–368 |
| 49 | 7465395 | Toxin-like outer membrane protein jhp0856 | H. pylori | 4.88 | 194–301 |
| 57 | 1657778 | Putative 98 kDa outer membrane protein | Chlamydophila abortus | 4.79 | 148–278 |
| 61 | 11362555 | Polymorphic membrane protein G family | C. pneumoniae | 4.77 | 465–615 |
| 71 | 5566260 | RNA-editing-associated protein 1 | Trypanosoma brucei | 4.67 | 165–265 |
| 76 | 9964588 | AMVITR08 | Amsacta moorei entomopoxvirus | 4.64 | 55–188 |
| 81 | 7463535 | Hypothetical protein | Borrelia burgdorferi | 4.61 | 630–753 |
| 82 | 1078697 | Amastigote-specific protein A2 precursor | Leishmania donovani infantum | 4.61 | 93–231 |
| 83 | 9955515 | Major pollen allergen-like protein | Arabidopsis thaliana | 4.61 | 80–216 |
| 89 | 7327850 | Pertactin | Bordetella bronchiseptica | 4.57 | 163–296 |
| 95 | 7468995 | Probable outer membrane protein F | C. trachomatis | 4.55 | 242–382 |
| 101 | 79327 | 190K surface antigen precursor | Rickettsia rickettsii | 4.51 | 1,022–1,162 |
| 102 | 7468505 | Polymorphic membrane protein G family | C. pneumoniae | 4.50 | 203–347 |
| 108 | 9631583 | Asn/Thr/Ser/Val rich protein | Paramecium bursaria Chlorella virus 1 | 4.48 | 1,056–1,198 |
| 109 | 9087163 | Major pollen allergen cha o 1 precursor | Chamaecyparis obtusa | 4.48 | 141–267 |
| 112 | 283435 | Probable cell-surface protein | Trypanosoma cruzl | 4.48 | 1,496–1,631 |
| 127 | 10956404 | pXO2-14 | Bacillus anthracis | 4.41 | 793–919 |
| 128 | 95503 | Pertactin | B. parapertussis | 4.41 | 163–301 |
| 137 | 7468993 | Probable outer membrane protein D | C. trachomatis | 4.37 | 574–718 |
| 151 | 452482 | Pectate lyase | Aspergillus nidulans | 4.32 | 135–259 |
| 155 | 8978389 | Pmp-3 | C. pneumoniae J138 | 4.31 | 49–198 |
| 156 | 7468854 | Hypothetical protein pmpB | C. trachomatis | 4.31 | 1,010–1,133 |
| 158 | 74141 | Early E1B 44K protein I | Tupaia adenovirus 1 | 4.30 | 71–202 |
| 160 | 7465394 | Toxin-like outer membrane protein jhp0556 | H. pylori | 4.30 | 222–335 |
| 162 | 465388 | 47K protein | Bovine adenovirus 3 | 4.29 | 150–273 |
| 163 | 7464312 | Hypothetical protein | H. pylori | 4.28 | 638–792 |
| 166 | 9049492 | Pertactin | B. bronchiseptica | 4.27 | 43–159 |
| 167 | 2144235 | Outer membrane protein B precursor | Rickettsia japonica | 4.27 | 1,010–1,143 |
| 173 | 7493918 | Pectin lyase B precursor | A. niger | 4.26 | 165–297 |
| 175 | 7468500 | Polymorphic membrane protein g family | C. pneumoniae | 4.26 | 149–290 |
| 178 | 7468855 | Hypothetical protein pmpC | C. trachomatis | 4.26 | 876–1,021 |
| 180 | 7707789 | Protopectinase-AS | A. niger var. awamorii | 4.24 | 156–284 |
| 193 | 8101719 | Cup s 1 pollen allergen precursor | Cupressus sempervirens | 4.21 | 142–267 |
| 199 | 6688592 | Hypothetical protein | Legionella pneumophila | 4.19 | 59–203 |