. 2019 Apr 29;7:e6806. doi: 10.7717/peerj.6806

Table 3. Summary statistics of RAD data and estimates of genetic diversity metrics per sampling site (refer to Table 1 for full names of abbreviations) for neutral dataset.

Sampling site	Raw reads	Mapped reads	Subsampled mapped reads	SNPs	Private SNPs	π	θ	D	He	Ho	F_IS
O	5,862,886	1,457,363	743,255	1,278	2	0.034	0.041	−0.714	0.04	0	1
B	4,314,436	1,114,902	746,984	1,683	3	0.035	0.042	−0.722	0.04	0	1
L1	4,997,550	1,153,894	750,031	1,473	2	0.034	0.041	−0.698	0.04	0	1
L2	1,368,372	222,741	222,741	1,027	0	0.025	0.031	−0.616	0.06	0	1
BR	3,105,804	508,608	508,608	1,624	1	0.034	0.041	−0.705	0.05	0	1
K	5,943,674	1,251,227	750,736	1,342	1	0.035	0.041	−0.673	0.04	0	1
SK	5,882,100	1,360,205	748,113	1,387	0	0.035	0.042	−0.675	0.04	0	1
N	4,296,798	568,703	568,703	845	0	0.028	0.034	−0.654	0.05	0	1
M	3,991,420	475,470	475,470	914	1	0.025	0.032	−0.637	0.05	0	1
RB	7,429,328	781,740	750,470	1,105	0	0.022	0.028	−0.646	0.04	0	1
MOZ	4,136,268	719,319	719,319	598	0	0.026	0.028	−0.276	0.05	0	1
KEN	3,653,420	447,966	447,966	1,480	6	0.029	0.043	−0.324	0.04	0	1
Total	54,982,056	10,062,138	7,432,397	–	16	–	–	–	–	–	–
Range	1,368,372–7,429,328	222,741–1,457,363	222,741–750,736	845–1,683	0–6	0.023–0.035	0.029–0.043	(−0.723)–(−0.275)	0.04–0.06	0	1

Notes.