Table 4. Estimates of genetic diversity metrics per sampling site (refer to Table 1 for full names of abbreviations) for complete dataset.
Sampling site | Number of SNPs | Number private SNPs | π | θ | D | He | Ho | FIS |
---|---|---|---|---|---|---|---|---|
O | 1,362 | 2 | 0.034 | 0.041 | −0.716 | 0.04 | 0 | 1 |
B | 1,784 | 3 | 0.035 | 0.043 | −0.723 | 0.04 | 0 | 1 |
L1 | 1,577 | 2 | 0.034 | 0.041 | −0.700 | 0.04 | 0 | 1 |
L2 | 1,091 | 0 | 0.025 | 0.031 | −0.616 | 0.06 | 0 | 1 |
BR | 1,726 | 1 | 0.034 | 0.041 | −0.706 | 0.05 | 0 | 1 |
K | 1,436 | 1 | 0.035 | 0.042 | −0.674 | 0.04 | 0 | 1 |
SK | 1,483 | 0 | 0.035 | 0.042 | −0.676 | 0.04 | 0 | 1 |
N | 913 | 0 | 0.028 | 0.034 | −0.651 | 0.05 | 0 | 1 |
M | 997 | 1 | 0.026 | 0.033 | −0.636 | 0.05 | 0 | 1 |
RB | 1,192 | 0 | 0.023 | 0.028 | −0.646 | 0.04 | 0 | 1 |
moz | 668 | 0 | 0.027 | 0.029 | −0.273 | 0.05 | 0 | 1 |
ken | 1,580 | 6 | 0.029 | 0.043 | −0.323 | 0.04 | 0 | 1 |
Total | – | 16 | – | – | – | – | – | – |
range | 913–1,784 | 0–6 | 0.023–0.041 | 0.029–0.043 | (−0.706) - (−0.273) | 0.04–0.06 | 0 | 1 |
Notes.
- π
- Tajima’s π
- θ
- Watterson’s θ
- D
- Tajima’s D
- He
- Average expected heterozygosity
- Ho
- Average observed heterozygosity