Table 1.
Studied area | Sample type | Method | Gene target | Target | References |
---|---|---|---|---|---|
North Pacific subtropical Gyre | Sampling at sea surface | Metagenomic sequencing | Bacteria and Eukaryote | Bryant et al., 2016 | |
Baltic Sea | Incubation in seawater | V4 18S rRNA sequencing | 565-981 | Microbial Eukaryote, Fungi | Kettner et al., 2017 |
Estuary, Baltic Sea | Incubation in seawater | V4 16S rRNA sequencing | 515-806 | Bacteria and Archaea | Oberbeckmann et al., 2018 |
North Sea | Incubation in seawater | V4 16S rRNA sequencing | 515-806 | Bacteria and Archaea | Oberbeckmann et al., 2016 |
V9 18S rRNA sequencing | 1391-1795 | Microbial Eukaryote, Fungi | |||
North Sea | Sampling at sea surface- Incubation in seawater | DGGE 16S rRNA and sequencing | 341-534 | Bacteria and Archaea | Oberbeckmann et al., 2014 |
North Sea | Incubation in seawater and sediment | V3-V4 16S rRNA sequencing | 341-785 | Bacteria and Archaea | De Tender et al., 2017 |
rDNA-ITS2 sequencing | Fungi | ||||
North Atlantic subtropical gyre | Sampling at sea surface | V4 16S rRNA sequencing | 515-806 | Bacteria and Archaea | Debroas et al., 2017 |
V7 18S rRNA sequencing | 960-1438 | Eukaryote | |||
North Atlantic | Sampling at sea surface | V4-V6 16S rRNA sequencing | 518-1046 | Bacteria | Zettler et al., 2013 |
V9 16S rRNA sequencing | 1380-1510 | Microbial Eukaryote | |||
Mediterranean Sea | Sampling at sea surface | V3-V5 16S rRNA sequencing | 515-926 | Bacteria and Archaea | Dussud et al., 2018a |
Mediterranean Sea | Incubation in seawater | V3-V5 16S rRNA sequencing | 515-926 | Bacteria and Archaea | Dussud et al., 2018b |
Mediterranean Sea | Incubation in seawater | V3-V5 16S rRNA sequencing | 515-926 | Bacteria and Archaea | Briand et al., 2012 |
Arabian Sea | Incubation in seawater | V4 16S rRNA sequencing | ND | Bacteria | Muthukrishnan et al., 2018 |
Estuary, North Sea | Incubation in marine sediment | 16S rRNA cloning and sequencing | 27-1492 | Bacteria | Harrison et al., 2014 |
Estuary, East China Sea | Sampling at sediment surface | V3-V4 16S rRNA sequencing | 319-806 | Bacteria | Jiang et al., 2018 |
The PCR-amplified regions and the corresponding targeted organisms are indicated. ND, Non-described in the publication.