Table 4.
Gene sets enriched in phenotype high
| MSigDB collection | Gene set name | NES | NOM P-value | FDR q-value |
|---|---|---|---|---|
| h.all.v6.2.symbols.gmt | HALLMARK_MITOTIC_SPINDLE | 1.905323 | 0.00 | 0.074578 |
| h.all.v6.2.symbols.gmt | HALLMARK_G2M_CHECKPOINT | 1.801321 | 0.002079 | 0.084591 |
| h.all.v6.2.symbols.gmt | HALLMARK_E2F_TARGETS | 1.691148 | 0.010309 | 0.12907 |
Notes: Gene sets with NOM P-value <0.05 and FDR q-value <0.25 are considered as significant.
Abbreviations: FDR, false discovery rate; NES, normalized enrichment score; NOM, nominal.