TABLE 2.

TypeSeq and Linear Array test concordance on 849 clinical specimens for 37 HPV genotypes detectable by both assays

HPV genotype	No. of specimens				% Prevalence		% Agreement
	TS−/LA−d	TS+/LA−	TS−/LA+	TS+/LA+	TS	LA	Total	Positive	McNemar P value
6	757	10	10	72	9.7	9.7	97.6	78.3	0.82
11	820	0	3	26	3.1	3.4	99.7	89.7	0.25
16	534	11	16	288	35.2	35.8	96.8	91.4	0.44
18	739	11	5	94	12.4	11.7	98.1	85.5	0.21
26	835	1	1	12	1.5	1.5	99.8	85.7	0.48
31	722	18	4	105	14.5	12.8	97.4	82.7	0.005
33	796	4	0	49	6.2	5.8	99.5	92.5	0.13
34	834	8	0	7	1.8	0.8	99.1	46.7	0.013
35	762	11	3	73	9.9	9.0	98.4	83.9	0.061
39	736	6	9	98	12.3	12.6	98.2	86.7	0.61
40	791	14	3	41	6.5	5.2	98.0	70.7	0.015
42	735	22	6	86	12.7	10.8	96.7	75.4	0.005
44	787	6	7	49	6.5	6.6	98.5	79.0	1
45	756	8	7	78	10.1	10.0	98.2	83.9	1
51	697	18	28	106	14.6	15.8	94.6	69.7	0.18
52	697	46	9	97	16.8	12.5	93.5	63.8	NEe
53	709	9	12	119	15.1	15.4	97.5	85.0	0.66
54	767	6	17	59	7.7	9.0	97.3	72.0	0.037
56	736	20	8	85	12.4	11.0	96.7	75.2	0.037
58	758	19	1	71	10.6	8.5	97.6	78.0	0.0001
59	722	9	10	108	13.8	13.9	97.8	85.0	1
61	759	9	12	69	9.2	9.5	97.5	76.7	0.66
62	728	6	25	90	11.3	13.6	96.4	74.4	0.001
66	729	14	16	90	12.3	12.5	96.5	75.0	0.85
67	768	36	1	44	9.4	5.3	95.6	54.3	NE
68a	772	6	6	65	8.4	8.4	98.6	84.4	0.77
69	838	0	1	10	1.2	1.3	99.9	90.9	1
70	800	2	14	33	4.1	5.5	98.1	67.4	0.006
71	840	1	1	7	0.9	0.9	99.8	77.8	0.48
72	812	4	2	31	4.1	3.9	99.3	83.8	0.68
73	787	0	13	49	5.8	7.3	98.5	79.0	0.0009
81	794	2	8	45	5.5	6.2	98.8	81.8	0.11
82b	779	6	4	60	7.8	7.5	98.8	85.7	0.75
83	789	2	34	24	3.1	6.8	95.8	40.0	NE
84	748	10	29	62	8.5	10.7	95.4	61.4	0.004
89	741	18	17	73	10.7	10.6	95.9	67.6	1
HRc	76	19	24	730	88.2	88.8	94.9	94.4	0.54

^aHPV68 represents results for the lineages detectable by LA (C to F, formerly “68b”).

^bHPV82 represents a combined result for 82 and 82v (IS39).

^cHR represents HPV types 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, and 68.

^dTS, TypeSeq; LA, Linear Array.

^eNE, not evaluable.