Table 3.
Cancer type† | Phenotype‡ | Upstream (O/S) and potential therapeutic targets§ | Regulation of SEs | Downstream | References |
---|---|---|---|---|---|
LC | P, G | NSD2 (O) | ↑ | RAS | Garcia-Carpizo et al., 2016 |
LC | P | TF: TBX4 (S) | ↑ | SFRP1, ADM, THBS1… | Horie et al., 2018 |
PC | NM | T2E fusion gene (O) | ↑ | EGR | Babu and Fullwood, 2017 |
CRC | G | NM | translocated on | CCAT1-L | Xiang et al., 2014 |
CRC | P | BETi: JQ1 (S) | ↓ | c-MYC | Togel et al., 2016 |
CRC | NM | NM | 5hmC modified | NM | Hu H. et al., 2017 |
CRC | NM | RTD (O) | formation of a 3D contact domain | IGF2 | Weischenfeldt et al., 2017 |
CLC | P, A | BETi: JQ1 (S) | ↓ | MAPK signaling pathway | Nakamura et al., 2017 |
PDA | P, G, I, M | KDM6A (S) | ↓ | DeltaNp63, MYC, RUNX3… | Andricovich et al., 2018 |
OSCC | P, A | CDK7i: THZ1 (S) | ↓ | PAK4, RUNX1, DNAJB1… | Jiang Y.Y. et al., 2017 |
OSCC | M, G | SCC-specific hypermethylation (O) | ↓ | ZFP36L2 | Lin et al., 2018 |
OSCC | P, I, M | TF: TP63 (O) | ↑ | lncRNA: LINC01503 | Xie et al., 2018 |
LIHC | P, I, M, CC | ZEB1 (O) | ↑ | lncRNA: HCCL5 | Peng et al., 2018 |
CVC | P | BETi: JQ1, iBET72 (S) | ↓ | viral oncogenes: E6 and E7 | Dooley et al., 2016 |
OC | OS | SNP: rs6674079 (1q22) (O) | ↑ | MEF2D | Johnatty et al., 2015 |
†Abbreviation for cancers: CLC, colon cancer; CRC, colorectal carcinoma; CVC, cervical cancer; LC, lung cancer; LIHC, liver hepatocellular carcinoma; OC, ovarian cancer; OSCC, oesophageal squamous cell carcinoma; PC, prostate cancers; PDA, pancreatic ductal adenocarcinoma. ‡Abbreviation for phenotypes: A, apoptosis; CC, cell cycle; G, growth; I, invasion; M, migration; NM, not mentioned; OS, overall survival; P, proliferation. §Abbreviation for molecules: BETi, Bromodomain inhibitor; CDK7i, CDK7 inhibitor; NM, not mentioned; O, oncogenic molecule; S, suppressor of cancer; RTD, Recurrent tandem duplications; SCC, squamous cell carcinoma; TF, transcription factor