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. 2019 May 3;9(5):199. doi: 10.1007/s13205-019-1728-2

Table 2.

VvMTPs were modeled using Phyre2

VvMTPs (query) Template proteins using for modeled
VvMTP4 c2qfiB, c3j1zP
VvMTP5 c2qfiB, c3j1zP
VvMTP7 c2qfiB, c3j1zP
VvMTP8 c2qfiB, c3j1zP
VvMTP9 c2qfiB, c3j1zP
VvMTP1 c2qfiB, c3j1zP, d2qfia2
VvMTP6 c2qfiB, c3j1zP, d1ng0a, c5ensA, d1c8na, c1ng0A
VvMTP8.1 c2qfiB, c3j1zP, c2enkA,
VvMTP9.1 c2qfiB, c3j1zP, c5gasN
VvMTP11 c2qfiB, c3j1zP, d1d4ua1

Models were predicted using the maximum coverage heuristics (MCH) of alignment between templates and query, c2qfiB (from the structure of the zinc transporter yiip) and c3j1zP (from the cation efflux protein transmembrane domain-like family), d2qfia2 (from the inward-facing conformation of the zinc transporter yiip by 2 cryo-electron microscopy), d1ng0a (from the cation efflux protein cytoplasmic domain-like), c5ensA (from the rhodamine bound structure of bacterial efflux pump), d1c8na (from the Tombusviridae-like VP family), c1ng0A (from the three-dimensional structure of cocksfoot mottle virus at 2.7a2 resolution), c2enkA (from the structure of a putative DNA-binding domain of the 2 human solute carrier family 30 zinc transporter protein), c5gasN (from the Thermus thermophilus v/a-ATPase, conformation 2), d1d4ua1 (from DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain)