Table 2.
VvMTPs (query) | Template proteins using for modeled |
---|---|
VvMTP4 | c2qfiB, c3j1zP |
VvMTP5 | c2qfiB, c3j1zP |
VvMTP7 | c2qfiB, c3j1zP |
VvMTP8 | c2qfiB, c3j1zP |
VvMTP9 | c2qfiB, c3j1zP |
VvMTP1 | c2qfiB, c3j1zP, d2qfia2 |
VvMTP6 | c2qfiB, c3j1zP, d1ng0a, c5ensA, d1c8na, c1ng0A |
VvMTP8.1 | c2qfiB, c3j1zP, c2enkA, |
VvMTP9.1 | c2qfiB, c3j1zP, c5gasN |
VvMTP11 | c2qfiB, c3j1zP, d1d4ua1 |
Models were predicted using the maximum coverage heuristics (MCH) of alignment between templates and query, c2qfiB (from the structure of the zinc transporter yiip) and c3j1zP (from the cation efflux protein transmembrane domain-like family), d2qfia2 (from the inward-facing conformation of the zinc transporter yiip by 2 cryo-electron microscopy), d1ng0a (from the cation efflux protein cytoplasmic domain-like), c5ensA (from the rhodamine bound structure of bacterial efflux pump), d1c8na (from the Tombusviridae-like VP family), c1ng0A (from the three-dimensional structure of cocksfoot mottle virus at 2.7a2 resolution), c2enkA (from the structure of a putative DNA-binding domain of the 2 human solute carrier family 30 zinc transporter protein), c5gasN (from the Thermus thermophilus v/a-ATPase, conformation 2), d1d4ua1 (from DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain)