Table 1.
Performance of different assemblers in the recovery of Homarus gammarus mitogenome
| Assembler | Contig Length (bait/contigID) | Protein coding gene (number of intact genes) |
|---|---|---|
| MITObim v. 1.9 |
14,885 bp (rrnL) | nad1, cytb, nad6, nad4L, nad4, nad5, nad3, cox3, atp6, atp8, cox2, cox1, nad2 (13) |
| 13,143 bp (cytb) | nad2, cox1, cox2, atp8, atp6, cox3, nad3, nad5, nad4, nad4L, nad6, cytb, nad1 (13) | |
| 6984 bp (nad2) | nad2, cox1, cox2, atp8, atp6, cox3, nad3, nad5, cox2 (9) | |
| Megahit v1.1.2 |
5162 bp (ctg154136) | nad2, cox1, cox2, atp8, atp6, cox3 (6) |
| 4045 bp (ctg252123) | cox3a, atp6, atp8, cox2a, nad5b, nad3, cox3 (4) | |
| 10,025 bp (ctg253367) | nad1, cytb, nad6, nad4L, nad4, nad5, nad3, cox3 (8) | |
| NOVOplasty v2.7.1 |
22,032 bp | nad2, cox1, cox2, atp8, atp6, cox3, nad3, nad5, cox2a, atp8, atp6, cox3a, nad3, nad5, cox2a, atp8, atp6, cox3a, nad3, nad5, cox2a, atp8, atp6, cox3a, nad3, nad5, cox3a, atp6, cox3a, nad3 (8) |
aInternal stop codon b Fragmented