Table 1.

Mapping statistics for the short reads aligned to the reference genome

Sample	Reads	Aligned	(%)	Aligned uniquely	(%)	Concordant pairs	(%)
Leaves mix 1	174,302,526	156,053,692	89.53	146,824,160	84.24	67,377,737	77.31
Leaves mix 2	100,610,456	90,830,182	90.28	85,189,347	84.67	39,376,061	78.27
Male 1	176,901,600	166,438,176	94.09	162,745,831	92.00	78,897,532	89.20
Male 2	161,712,846	148,354,681	91.74	143,956,991	89.02	67,078,816	82.96
Female 1	156,338,944	145,721,071	93.21	142,613,880	91.22	68,190,588	87.23
Female 2	159,498,702	150,720,535	94.50	147,119,433	92.24	70,972,223	88.99
Hermaphrodite 1	148,861,648	134,632,599	90.44	130,806,274	87.87	59,962,921	80.56
Hermaphrodite 2	140,273,124	129,676,914	92.45	126,846,024	90.43	59,289,428	84.53
Control	142,829,162	520	0.00	393	0.00	26	0.00