Table 2.
RNA seq mapping and differential expression analysis.
| NW186 + Fe arginine | NW186 + Fe citrulline | ||
|---|---|---|---|
| # Reads after QC filtering | 42 029 453 (1) | 30 895 435 (1) | |
| 49 141 964 (2) | 68 512 663 (2) | ||
| Uniquely mapped reads | 85.16% (1) | 57.87% (1) | |
| (against ATCC 1015 CDS) | 68.80% (2) | 68.27% (2) | |
| # Genes expressed (CPM ≥ 1) | 9620 | 9705 | |
| # Genes differentially expressed, log2FC threshold ≥ 0.58 (FDR ≤ 0.05) | 2385 | ||
| # EC covered (mapped to KEGG pathways) | 466 | ||
| # EC differentially expressed, log2FC threshold ≥ 0.58 (FDR ≤ 0.05) | 173 |