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. Author manuscript; available in PMC: 2019 Dec 1.
Published in final edited form as: Nat Protoc. 2018 Dec;13(12):3018–3041. doi: 10.1038/s41596-018-0076-8

Table 2|. Troubleshooting table.

 Step  Problem  Possible reason  Solution

Reagent setup No hiPSCs produced during reprogramming Low-quality reprogramming virus and reagents Use fresh reprogramming virus and reagents; use a higher MOI or more PBMCs during reprogramming; use a hypoxia incubator during reprogramming
14 Spontaneously differentiating hiPSCs Low-quality hiPSC lines with possible genetic irregularities Scrape and repick hiPSC colonies with ideal morphologies; check passage number and expiration date of E8 medium
18 No hiPSC-CMs produced during differentiation Line-to-line variability in hiPSC differentiation capacity Try different concentrations of Wnt agonist (6–24 μM) CHIR99021; alter the starting confluency for hiPSC differentiation
19 Excessive hiPSC-CM death during glucose starvation selection process hiPSC-CMs are somewhat immature and may not have completely shifted metabolically to utilizing lactate End glucose starvation early for hiPSC-CMs; subject the cells to glucose starvation for a maximum of 2 d only if the cells cannot tolerate
this environment
33 hiPSC-CMs do not survive well when replated into high-throughput screening plates hiPSC-CM survival is dependent on cell confluency and extracellular matrix deposition Use younger hiPSC-CMs for replating; increase Matrigel concentration; replate hiPSC-CMs at higher confluency; do not disturb hiPSC-CMs for 48 h after replating
36 Substantial hiPSC-CM death when thawing frozen hiPSC-CMs Substantial cell loss is a known problem when thawing hiPSC-CMs Use >10% FBS when thawing hiPSC-CMs; thaw at a higher confluency; use rho kinase inhibitor while thawing
41A(v) High background during fluorescence imaging for drug-induced hiPSC-CM
cytotoxicity assays
Plastic plates cause autofluorescence Use low-autofluorescence multi-well imaging plates
42 Unable to compute the effective concentration metric for assessing hiPSC-CM contractility Unable to gain access to a high-throughput contractility analysis platform such as the KIC A simplified CSI (CSI-Lite) uses only the CoB concentration for assessing drug-induced alterations in hiPSC-CM contractility. Drug concentration causing CoB can be easily foun simply by looking at drug-treated wells
46 High well-to-well variability in hiPSC-CM contractility Slightly different numbers of hiPSC-CMs plated per well or impure cell populations Increase the number of technical replicates for contractility analysis; purify hiPSC-CMs for a longer time before replating; utilize well-specific
baseline controls instead of vehicle controls