Table 2|. Troubleshooting table.
| Step | Problem | Possible reason | Solution |
|---|---|---|---|
| Reagent setup | No hiPSCs produced during reprogramming | Low-quality reprogramming virus and reagents | Use fresh reprogramming virus and reagents; use a higher MOI or more PBMCs during reprogramming; use a hypoxia incubator during reprogramming |
| 14 | Spontaneously differentiating hiPSCs | Low-quality hiPSC lines with possible genetic irregularities | Scrape and repick hiPSC colonies with ideal morphologies; check passage number and expiration date of E8 medium |
| 18 | No hiPSC-CMs produced during differentiation | Line-to-line variability in hiPSC differentiation capacity | Try different concentrations of Wnt agonist (6–24 μM) CHIR99021; alter the starting confluency for hiPSC differentiation |
| 19 | Excessive hiPSC-CM death during glucose starvation selection process | hiPSC-CMs are somewhat immature and may not have completely shifted metabolically to utilizing lactate | End glucose starvation early for hiPSC-CMs; subject the cells to glucose starvation for a maximum of 2 d only if the cells cannot tolerate this environment |
| 33 | hiPSC-CMs do not survive well when replated into high-throughput screening plates | hiPSC-CM survival is dependent on cell confluency and extracellular matrix deposition | Use younger hiPSC-CMs for replating; increase Matrigel concentration; replate hiPSC-CMs at higher confluency; do not disturb hiPSC-CMs for 48 h after replating |
| 36 | Substantial hiPSC-CM death when thawing frozen hiPSC-CMs | Substantial cell loss is a known problem when thawing hiPSC-CMs | Use >10% FBS when thawing hiPSC-CMs; thaw at a higher confluency; use rho kinase inhibitor while thawing |
| 41A(v) | High background during fluorescence imaging for drug-induced hiPSC-CM cytotoxicity assays |
Plastic plates cause autofluorescence | Use low-autofluorescence multi-well imaging plates |
| 42 | Unable to compute the effective concentration metric for assessing hiPSC-CM contractility | Unable to gain access to a high-throughput contractility analysis platform such as the KIC | A simplified CSI (CSI-Lite) uses only the CoB concentration for assessing drug-induced alterations in hiPSC-CM contractility. Drug concentration causing CoB can be easily foun simply by looking at drug-treated wells |
| 46 | High well-to-well variability in hiPSC-CM contractility | Slightly different numbers of hiPSC-CMs plated per well or impure cell populations | Increase the number of technical replicates for contractility analysis; purify hiPSC-CMs for a longer time before replating; utilize well-specific baseline controls instead of vehicle controls |