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. 2019 Apr 30;10:910. doi: 10.3389/fmicb.2019.00910

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Copyright © 2019 González, Santamaría, Bustos, Pérez-Carrascal, Vinuesa, Juárez, Martínez-Flores, Cevallos, Brom, Martínez-Romero and Romero.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Species core genome phylogeny of 91 Rhizobium strains. Three additional Rhizobium strains were used here as outgroup for rooting: R. oryzae 1.7048, R. pusense CCGM11, and Rhizobium sp Root 274. The ML tree is based on consensus core proteins defined by the GET-HOMOLOGS package and selected for optimal phylogenetic attributes and the GET-PHYLOMARKERS tool. The nodes identified in the ribosomal tree (Supplementary Figure S1) that define the clades rC-I to rC-IV are labeled on the tree. The length and depth of the branches from the nodes indicated for clades rC-III and rC-IV, support two underlying clades (A and B) formed by highly divergent Rhizobium species.