Table 2. Data sets available on Galaxy.
Name | Contents | # of Lines |
---|---|---|
SNVs | A. digitifera scaffold positions with two observed nucleotides among the three Acropora genomes | 8,368,985 |
indels | positions and contents of observed short (≤ 20 bp) insertion/deletions | 940,345 |
SAPs | protein sequence positions of non-synonymous and synonymous substitutions | 561,015 |
mitochondrial SNVs | A. digitifera mitochondrial genome positions with two observed nucleotides | 172 |
mitochondrial indels | position of an insertion/deletion | 1 |
exons | scaffold positions of annotated exon endpoints | 222,156 |
PCR-ready SNVs | SNVs where no other SNV, indel, or low-complexity sequence is within 50 bp | 894 |