Table 1. Evaluation with HGAP and Sniffle.

	HGAP		Sniffles		TSD		NGS
	Int.	Rea.	Int.	Rea.	Int.	Rea.	Int.	Rea.
Region1	left	no	right	no	both	yes	right	—
Region2	no	no	both	no	both	yes	both	—
Region3	no	no	right	no	both	yes	both	—
Region4	right	no	both	yes	both	yes	both	—
Region5	no	no	both	yes	both	yes	right	—
Region6	no	no	both	yes	both	yes	both	—
Region7	both	yes	both	yes	both	yes	both	—
Region8	left	yes	both	yes	both	yes	both	—
Region9	left	yes	both	yes	both	yes	both	—

Int.: Integration sites; Rea: Rearrangement sites; left/right: only left/right site of an integration event is identified.