Table 2. Summary of QTL identified in bi-parent and GWAS populations of common wheat.
| Closest SNP marker | Chrom. | Contig ID | Physical location (Mb) | P value | Sizea | Parent with fav. allele | Expl. Var. (%) |
|---|---|---|---|---|---|---|---|
| WH542×HD29 RIL population | |||||||
| IWA1644 | 1A | 1AL_3934771 | 590.0 | 0.000 | 4.08 | WH542 | 12.2 |
| IWB57185 | 3B | 3B_10665467 | 16.5 | 0.000 | −6.17 | HD29 | 27.8 |
| WH542×W485 RIL population | |||||||
| IWB59865 | 1B | 1BS_3415168 | 17.7 | 0.000 | −5.39 | W485 | 15.8 |
| IWB2650 | 1D | 1DS_1878443 | 10.4 | 0.000 | 6.59 | WH542 | 23.6 |
| IWB53742 | 3B | 3B_10760567 | 45.3 | 0.000 | 3.43 | WH542 | 6.4 |
| IWB74188 | 4B | 4BL_6962777 | 651.8 | 0.000 | −3.49 | W485 | 6.6 |
| IWA4550 | 5D | 5DL_4512777 | 192.3 | 0.000 | −2.88 | W485 | 4.5 |
| IWA349 | 6B | 6BL_4368768 | 688.2 | 0.000 | −2.85 | W485 | 4.4 |
| IWA7816 | 6D | 6DL_518479 | 398.2 | 0.000 | 3.33 | WH542 | 6.0 |
| IWB34881 | 7A | 7AL_4556858 | 634.4 | 0.000 | 3.72 | WH542 | 7.5 |
| Genome-wide association panel | |||||||
| IWA7633 | 2B | 2BS_5175914 | 6.3 | 0.000 | −4.51 | RAC655 | 2.8 |
| IWA5637 | 2D | 2DL_9872584 | 369.5 | 0.000 | −4.70 | RAC655 | 2.4 |
| IWA2008 | 3A | 3AL_4451937 | 689.5 | 0.000 | −5.96 | RAC655 | 2.7 |
| IWA3835 | 3B | 3B_10756975 | 664.9 | 0.000 | −8.47 | Batavia | 10.1 |
| IWA1123 | 3D | 3DS_2593299 | 33.2 | 0.000 | −7.80 | Batavia | 3.9 |
| IWA2087 | 4B | 4BL_6970737 | 670.4 | 0.000 | −3.56 | RAC655 | 1.3 |
| IWA7302 | 5A | 5AS_1502365 | 19.2 | 0.000 | −8.87 | RAC655 | 6.8 |
a
Effect size in percentage Karnal bunt infection.