Table 2. Summary of different types of repeat elements.
Type | Number | Bases | % of Genome |
---|---|---|---|
SINEs | 33,478 | 7,221,604 | 1.52 |
LINEs | 179,696 | 32,921,812 | 6.91 |
LTR | 17,235 | 6,433,260 | 1.35 |
DNA | 127,299 | 19,969,616 | 4.19 |
Unclassified | 397,153 | 59,304,762 | 12.45 |
Total interspersed | 125,851,054 | 26.42 | |
Small RNA | 323 | 44,904 | 0.01 |
Simple repeats | 416,660 | 18,229,578 | 3.83 |
Low complexity | 89,350 | 4,553,468 | 0.96 |
Total | 148,389,050 | 31.15 |