Table 5. QTL detected for end-use quality traits in a bread wheat (Triticum aestivum L.) RIL population derived from a cross between Glenn (PI-639273) and Traverse (PI-642780).
| Traita | A-QTL name | Other associated traits | Env.b | Chromosome/linkage group | Left marker | Right marker | Position (cM)c | LODd | Additive effect | PV(%)e | Confidence intervals | Previously identified A-QTL in the same chromosome region |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FE | AQ.FE.ndsu.1A.1 | — | I, X | 1A1 | BS00084022_51 | RAC875_c9700_989 | 50 | 8.7788 | −0.4935 | 14.4911 | 48.5-50.5 | — |
| FE | AQ.FE.ndsu.1A.2 | GPC | VII | 1A1 | wsnp_Ra_c15564_23999084 | wsnp_BG263358A_Ta_2_3 | 94 | 7.6547 | −1.061 | 19.4012 | 92.5-95.5 | — |
| GPC | AQ.GPC.ndsu.1A | FE | III, V, VIII, VIIII | 1A1 | wsnp_Ra_c15564_23999084 | wsnp_BG263358A_Ta_2_3 | 95 | 4.6476 | 0.2376 | 13.6941 | 93.5-96.5 | — |
| BMT | AQ.BMT.ndsu.1B | MMLPI | IV, VIII, VIIII | 1B1 | TA015141-0717 | wsnp_JD_c4444_5575748 | 13 | 4.7945 | 0.1736 | 12.9075 | 12.5-13.5 | — |
| BMT | AQ.BMT.ndsu.1B.1 | — | VI, X | 1B1 | Kukri_c33561_564 | wsnp_Ku_c16938_25916260 | 14 | 13.6184 | 0.1303 | 12.085 | 13.5-14.5 | — |
| BMT | AQ.BMT.ndsu.1B.2 | MMLPT | I, V | 1B1 | RAC875_c75885_302 | Tdurum_contig28305_106 | 20 | 6.5489 | 0.1804 | 12.5043 | 19.5-20.5 | — |
| GPC | AQ.GPC.ndsu.1B.1 | MIXOPA | VII | 1B1 | BS00064162_51 | Excalibur_rep_c101787_89 | 57 | 3.9039 | 0.2683 | 8.1766 | 56.5-58.5 | — |
| MIXOPA | AQ.MIXOPA.ndsu.1B.1 | GPC | IV | 1B1 | BS00064162_51 | Excalibur_rep_c101787_89 | 57 | 3.9039 | 0.2683 | 7.7358 | 56.5-58.5 | — |
| MMLPI | AQ.MMLPI.ndsu.1B.1 | BMT | VI, VIII, X | 1B1 | TA015141-0717 | wsnp_JD_c4444_5575748 | 13 | 7.5203 | 10.7587 | 15.9048 | 12.5-13.5 | — |
| MMLPI | AQ.MMLPI.ndsu.1B.2 | MMLPT; MMLTV; BMT | IV | 1B1 | RAC875_c75885_302 | Tdurum_contig28305_106 | 20 | 14.3296 | 33.5754 | 16.6441 | 19.5-20.5 | — |
| MMLPT | AQ.MMLPT.ndsu.1B | BMT | I, IV, V, VI, VII, VIII, VIIII, X | 1B1 | RAC875_c75885_302 | Tdurum_contig28305_106 | 20 | 15.2002 | 0.3698 | 24.4267 | 19.5-20.5 | Jin et al. 2016 |
| MMLPW | AQ.MMLPW.ndsu.1B | — | V, X | 1B1 | wsnp_Ex_c2569_4780450 | Tdurum_contig65853_534 | 62 | 4.6175 | 0.3643 | 11.4578 | 60.5-65.5 | — |
| MMLTV | AQ.MMLTV.ndsu.1B | MMLPI; MMLPT; BMT | IV | 1B1 | RAC875_c75885_302 | Tdurum_contig28305_106 | 20 | 4.3062 | 12.1355 | 1.6784 | 19.5-20.5 | — |
| BA | AQ.BA.ndsu.1B | — | I, IV, VIII, III | 1B3 | BS00093275_51 | BobWhite_c12960_138 | 0 | 3.6756 | −0.4042 | 8.1774 | 0-2.5 | Tsilo et al. 2011 |
| BMT | AQ.BMT.ndsu.1D | — | VIII, X | 1D1 | RAC875_rep_c105196_532 | BS00038418_51 | 76 | 25.0366 | 0.1984 | 27.7923 | 74.5-76.5 | — |
| BMT | AQ.BMT.ndsu.2A.1 | GPC | I | 2A1 | Excalibur_c27279_699 | Kukri_c44255_832 | 37 | 8.2391 | −0.204 | 12.8403 | 34.5-38.5 | — |
| FE | AQ.FE.ndsu.2A.1 | MMLPT | V | 2A1 | BS00022903_51 | Ra_c34214_1320 | 20 | 7.9438 | 0.8736 | 10.3544 | 19.5-22.5 | — |
| GPC | AQ.GPC.ndsu.2A.1 | BMT | IV,V | 2A1 | Kukri_c44255_832 | RAC875_c13861_1248 | 38 | 6.2687 | 0.4351 | 13.19 | 37.5-39.5 | — |
| GPC | AQ.GPC.ndsu.2A.2 | MMLPT | III, X | 2A1 | wsnp_Ex_c28204_37349164 | Kukri_c77188_798 | 18 | 4.939 | 0.1596 | 8.0024 | 17.5-19.5 | — |
| MMLPT | AQ.MMLPT.ndsu.2A.1 | GPC | I, III | 2A1 | wsnp_Ex_c28204_37349164 | Kukri_c77188_798 | 18 | 5.2543 | −0.5361 | 16.3459 | 17.5-19.5 | — |
| MMLPT | AQ.MMLPT.ndsu.2A.2 | FE | III | 2A1 | BS00022903_51 | Ra_c34214_1320 | 20 | 7.9438 | 0.8736 | 10.0223 | 19.5-22.5 | — |
| GPC | AQ.GPC.ndsu.2B | — | I, III | 2B2 | BS00064658_51 | RAC875_c1755_971 | 27 | 4.6386 | −0.1599 | 8.7567 | 23.5-27.5 | — |
| BLV | AQ.BLV.ndsu.2D.1 | — | II, X, III | 2D2 | Kukri_c31121_1460 | Kukri_c44769_750 | 7 | 3.8365 | 4.4342 | 9.7413 | 5.5-8.5 | — |
| BLV | AQ.BLV.ndsu.2D.2 | — | VII, VIII | 2D2 | BobWhite_c6365_965 | D_GDS7LZN02FDZX8_269 | 4 | 3.6217 | 8.5516 | 12.8348 | 3.5-4.5 | Tsilo et al. 2011 |
| MMLPT | AQ.MMLPT.ndsu.2D | — | II, IV, VII, X | 2D3 | BS00011109_51 | wsnp_Ku_c8712_14751858 | 20 | 4.3893 | −0.1918 | 6.5246 | 13.5-22 | — |
| BMT | AQ.BMT.ndsu.3A | MMLPT | I, V, VIIII, X | 3A2 | BobWhite_c38444_238 | Kukri_c10751_1031 | 47 | 12.0827 | 0.1218 | 10.2537 | 46.5-48.5 | — |
| GPC | AQ.GPC.ndsu.3A | — | III, V, X | 3A2 | BS00022058_51 | Excalibur_c39808_453 | 26 | 5.9339 | −0.334 | 9.3796 | 21.5-28.5 | — |
| MMLPT | AQ.MMLPT.ndsu.3A.1 | BMT | IV, VIIII, X | 3A2 | Kukri_c10751_1031 | wsnp_Ex_c1533_2930233 | 49 | 6.8915 | 0.2345 | 9.5047 | 47.5-51.5 | — |
| GPC | AQ.GPC.ndsu.3B.1 | MMLPV | X | 3B1 | wsnp_Ex_c47078_52393295 | D_GB5Y7FA01EIDVZ_263 | 25 | 7.5082 | 0.206 | 13.0023 | 22.5-27.5 | — |
| MMLPV | AQ.MMLPV.ndsu.3B.1 | GPC | VIII | 3B1 | RFL_Contig1456_842 | wsnp_Ex_c47078_52393295 | 24 | 5.3548 | 2.4546 | 7.5943 | 22.5-27.5 | — |
| FE | AQ.FE.ndsu.3B | — | I, V, VII, X | 3B1 | Tdurum_contig82214_79 | wsnp_BE499016B_Ta_2_1 | 68 | 8.5226 | −0.5046 | 15.2959 | 64.5-69.5 | Carter et al. 2012 |
| BMT | AQ.BMT.ndsu.3B.1 | — | II, V, X | 3B2 | Tdurum_contig12455_385 | Excalibur_c21708_555 | 0 | 4.9225 | 0.0716 | 3.5988 | 0-0.5 | — |
| BMT | AQ.BMT.ndsu.3B.2 | MMLPI; MMLTV | I, VIII | 3B2 | Excalibur_rep_c102270_677 | Kukri_c2227_583 | 6 | 7.7153 | 0.1939 | 11.5294 | 5.5-6.5 | — |
| MMLPI | AQ.MMLPT.ndsu.3B.2 | BMT; MMLTV; | IV | 3B2 | Excalibur_rep_c102270_677 | Kukri_c2227_583 | 6 | 4.9406 | 8.976 | 9.6693 | 5.5-6.5 | — |
| MMLPT | AQ.MMLPT.ndsu.3B.2 | — | IV, VI, VIII, X | 3B2 | Tdurum_contig15928_135 | BobWhite_c9424_243 | 5 | 3.8931 | 0.1712 | 5.1946 | 4.5-5.5 | — |
| MMLTV | AQ.MMLTV.ndsu.3B.2 | BMT; MMLTV; | V | 3B2 | Excalibur_rep_c102270_677 | Kukri_c2227_583 | 6 | 3.4132 | 2.3331 | 9.894 | 5.5-6.5 | — |
| BA | AQ.BA.ndsu.4A | FE; MMLTV | IV, VI, X | 4A1 | BS00022395_51 | BS00021957_51 | 147 | 6.6931 | 0.2547 | 11.552 | 144.5-148.5 | Jin et al. 2016 |
| MMLPV | AQ.MMLPV.ndsu.4A | — | VII, X | 4A1 | TA004912-0408 | Kukri_c17417_797 | 150 | 5.821 | 0.8158 | 13.7424 | 149.5-150 | — |
| MMLTV | AQ.MMLTV.ndsu.4A | FE; BA | IV, V, X | 4A1 | Kukri_c35451_857 | BS00022395_51 | 143 | 3.5732 | 0.7363 | 7.8228 | 141.5-145.5 | — |
| FE | AQ.FE.ndsu.4A.1 | MMLTV;BA | X | 4A1 | Kukri_c18346_556 | Kukri_c35451_857 | 142 | 4.5021 | −0.3776 | 6.9089 | 141.5-144.5 | — |
| BLV | AQ.BLV.ndsu.4B.1 | BMT | VI, X | 4B1 | RAC875_c39339_400 | RAC875_c17026_714 | 97 | 4.0885 | −1.3594 | 7.4436 | 94.5-97.5 | — |
| BMT | AQ.BMT.ndsu.4B.1 | BLV | III, X | 4B1 | RAC875_c39339_400 | RAC875_c17026_714 | 97 | 4.0885 | −1.3594 | 6.7181 | 94.5-97.5 | — |
| GPC | AQ.GPC.ndsu.4B1 | — | I, II | 4B1 | BobWhite_c47144_153 | Tdurum_contig10302_187 | 94 | 6.6325 | −0.2086 | 15.0008 | 93.5-94.5 | — |
| BA | AQ.BA.ndsu.4B.1 | MIXOPA | V | 4B1 | Excalibur_c39876_403 | Kukri_c19909_733 | 70 | 4.7301 | −0.6243 | 11.2395 | 69.5-73.5 | — |
| MIXOPA | AQ.MIXOPA.ndsu.1B.1 | BA | II | 4B1 | Excalibur_c39876_403 | Kukri_c19909_733 | 70 | 5.0876 | −0.2838 | 12.3347 | 69.5-70.5 | — |
| BA | AQ.BA.ndsu.4D.1 | MELS; MERS | I, III, V, VIIII, X | 4D1 | wsnp_JD_rep_c51623_35119179 | Ra_c350_837 | 1 | 14.2653 | −0.3725 | 28.0617 | 0-1.5 | — |
| MELS | AQ.MELS.ndsu.4D.1 | BA; MERS | III, X | 4D1 | wsnp_JD_rep_c51623_35119179 | Ra_c350_837 | 1 | 6.6917 | −3.0005 | 18.0403 | 0-1.5 | — |
| MERS | AQ.MERS.ndsu.4D.1 | BA; MELS | IV, X | 4D1 | wsnp_JD_rep_c51623_35119179 | Ra_c350_837 | 1 | 3.6362 | 0.4349 | 13.0994 | 0-2.5 | — |
| BLV | AQ.BLV.ndsu.5A | — | IV,VI | 5A1 | Kukri_c28555_114 | wsnp_Ku_c18023_27232712 | 36 | 6.9598 | −5.0049 | 15.8001 | 30.5-42.5 | — |
| BLV | AQ.BLV.ndsu.5B | GPC | X | 5B1 | BS00064297_51 | wsnp_BE499835B_Ta_2_5 | 25 | 5.5542 | 18.5451 | 2.1438 | 11.5-35.5 | — |
| FE | AQ.FE.ndsu.5B | — | V, X | 5B1 | Kukri_c3070_72 | BS00021993_51 | 240 | 3.4037 | 0.2971 | 5.1324 | 238.5-241 | — |
| GPC | AQ.GPC.ndsu.5B | BLV | I, II, IV, V, VII, VIIII, X | 5B1 | BS00032003_51 | wsnp_BE499835B_Ta_2_5 | 14 | 10.3662 | 0.3196 | 20.1838 | 9.5-20.5 | — |
| MIXOPA | AQ.MIXOPA.ndsu.5B | — | II, III | 5B1 | wsnp_Ex_c2582_4804223 | Tdurum_contig10268_1000 | 153 | 3.5364 | 0.3448 | 12.2996 | 152.5-153.5 | — |
| MMLPT | AQ.MMLPT.ndsu.5B | — | I, VII | 5B1 | RAC875_c33933_350 | JD_c9261_426 | 49 | 3.7684 | −0.2447 | 7.2642 | 48.5-63.5 | — |
| BMT | AQ.BMT.ndsu.5D | MMLPT | IV, V, X | 5D1 | BS00110953_51 | Excalibur_c16573_197 | 18 | 4.5987 | −0.0698 | 3.4365 | 9.5-19.5 | — |
| MMLPT | AQ.MMLPT.ndsu.5D | BMT | IV, VI, VIII, VIIII, X | 5D1 | BS00110953_51 | Excalibur_c16573_197 | 19 | 7.4008 | −0.1963 | 15.3925 | 12.5-19.5 | — |
| BLV | AQ.BLV.ndsu.6B | CTCL | II, III | 6B1 | BobWhite_c10140_297 | BobWhite_c8571_699 | 52 | 6.1493 | 5.56 | 15.4305 | 51.5-52.5 | — |
| CBCL | AQ.CBCL.ndsu.6B | — | II, X | 6B1 | CAP8_c1678_709 | Kukri_c23433_416 | 46 | 4.4927 | 0.0378 | 3.1303 | 44.5-46.5 | Groos et al. (2007) |
| CTCL | AQ.CTCL.ndsu.6B.1 | BLV | III | 6B1 | BobWhite_c10140_297 | BobWhite_c8571_699 | 52 | 5.5319 | 0.2905 | 16.3676 | 51.5-52.5 | — |
| FE | AQ.FE.ndsu.6B | — | II, IV, X | 6B1 | BobWhite_c30500_527 | Excalibur_c31379_71 | 95 | 5.4465 | −0.3753 | 8.367 | 94.5-95.5 | — |
| BA | AQ.BA.ndsu.6D | — | II, VIII | 6D1 | wsnp_Ex_c23383_32628864 | BobWhite_c13435_700 | 43 | 4.6326 | −1.3204 | 3.7619 | 41.5-44.5 | — |
| BLV | AQ.BLV.ndsu.7A.1 | — | IV, X | 7A1 | Excalibur_rep_c109881_701 | Tdurum_contig16202_319 | 59 | 4.5713 | 1.439 | 8.3454 | 58.5-59.5 | — |
| BLV | AQ.BLV.ndsu.7A.2 | — | IV, X | 7A1 | RAC875_c9012_276 | BobWhite_c15497_199 | 118 | 6.5815 | 1.7646 | 12.6133 | 116.5-118.5 | — |
| BMT | AQ.BMT.ndsu.7A | — | IV, X | 7A1 | Excalibur_c44794_122 | RAC875_c55351_223 | 5 | 5.5287 | 0.0764 | 4.1206 | 1.5-6.5 | — |
| CTCL | AQ.CTCL.ndsu.7A | MMLPV | III, X | 7A1 | Excalibur_c33589_373 | RAC875_rep_c111778_387 | 86 | 5.6857 | 0.016 | 15.7116 | 85.5-86.5 | — |
| GPC | AQ.GPC.ndsu.7A.1 | MMLPT | II | 7A1 | BobWhite_c23261_226 | BS00022970_51 | 24 | 4.2443 | 0.1848 | 6.5514 | 22.5-24.5 | — |
| MMLPT | AQ.MMLPT.ndsu.7A.1 | GPC | VIII | 7A1 | BobWhite_c23261_226 | BS00022970_51 | 24 | 3.6069 | −0.2228 | 5.9423 | 23.5-24.5 | — |
| MMLPV | AQ.MMLPV.ndsu.7A.1 | CTCL | IV | 7A1 | Excalibur_c33589_373 | RAC875_rep_c111778_387 | 86 | 4.1338 | 1.8898 | 11.2755 | 84.5-86.5 | — |
| GPC | AQ.GPC.ndsu.7A | — | IV, VII, VIII, X | 7A2 | BobWhite_c55693_396 | BS00023003_51 | 16 | 4.6188 | 0.1507 | 7.1353 | 15.5-17 | Christov et al. 2007 |
| BLV | AQ.BLV.ndsu.7B | — | V, X | 7B1 | BobWhite_c41356_62 | wsnp_CAP7_c44_26549 | 33 | 3.7635 | 3.4251 | 10.7091 | 31.5-39.5 | — |
| MMLPT | AQ.MMLPT.ndsu.7B | — | I, III | 7B1 | BobWhite_c44404_312 | CAP12_c1816_325 | 42 | 4.3413 | −0.3644 | 3.6894 | 41.5-50.5 | — |
| BMT | AQ.BMT.ndsu.7D | — | I,V | 7D1 | Kukri_c23468_590 | Kukri_c16416_647 | 12 | 3.4443 | 0.1253 | 4.8285 | 7.5-13.5 | — |
| FE | AQ.FE.ndsu.7D | — | IV, VI | 7D2 | RAC875_c39217_314 | Excalibur_c16580_388 | 1 | 3.518 | 0.7611 | 11.1963 | 0-3.5 | — |
| DO | AQ.DO.ndsu.7D | — | VI, X | 7D3 | wsnp_BE490643D_Ta_2_1 | BobWhite_rep_c65034_450 | 71 | 4.1343 | −0.0572 | 13.6687 | 70.5-72.5 | — |
| MMLPT | AQ.MMLPT.ndsu.7D | — | I, III | 7D3 | IAAV6265 | BobWhite_c7263_337 | 27 | 3.544 | 0.315 | 3.0233 | 25.5-32.5 | — |
a
GPC: grain protein content, BMT: bake mixing time, BA: baking absorption, BLV: bread loaf volume, CBCL: crumb color, CTCL: crust color, FE: flour extraction rate, MIXOPA: the general mixograph pattern, MELS: mixograph envelope left slope, MERS: mixograph envelope right slope, MMLPT: mixograph MID line peak time, MMLPV: mixograph MID line peak value, MMLTV: mixograph MID line time * value, MMLPW: mixograph MID line peak width, MMLPI: mixograph MID line peak integral, DO: dough character.
b
I: Prosper 2012, II: Carrington 2012, III: Casselton 20012, IV: Prosper 2013, V: Carrington 2013, VI: Minot 2013, VII: Prosper 2014, VIII: Carrington 2014, VIII: Minot 2014, X: BLUP values across all locations.
c
centimorgan.
d
Log of the Odds.
e
Phenotypic variation.