Table 2. Structural variants identified in the Carménère primary scaffolds when compared to Carménère haplotigs, PN40024 (chromosomes), and Cabernet Sauvignon (primary assembly).
| Carménère Primary Scaffolds | ||||||
|---|---|---|---|---|---|---|
| Carménère Haplotigs | PN40024 | Cabernet Sauvignon | ||||
| Count | Total length | Count | Total length | Count | Total length | |
| SNPs | 1,506,269 | 1,506,269 | 3,917,352 | 3,917,352 | 2,449,007 | 2,449,007 |
| Short Insertions (<50bp) | 503,729 | 891,412 | 617,760 | 1,712,482 | 499,827 | 1,185,538 |
| Short Deletions (<50bp) | 624,017 | 1,046,233 | 452,437 | 1,489,269 | 408,465 | 1,073,441 |
| Long Insertions (≥50bp) | 3,412 | 7,875,979 | 11,436 | 117,627,739 | 6,394 | 24,115,347 |
| Long Deletions (≥50bp) | 2,747 | 4,021,742 | 6,986 | 8,466,055 | 4,599 | 5,708,870 |
| Duplication Contraction | 186 | 72,918 | 736 | 256,328 | 396 | 134,216 |
| Duplication Expansion | 229 | 80,725 | 541 | 148,123 | 405 | 241,869 |
| Inversions | 170 | 784,551 | 1,551 | 6,594,750 | 460 | 1,300,866 |