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. Author manuscript; available in PMC: 2020 May 7.
Published in final edited form as: Structure. 2019 Mar 1;27(5):749–763.e4. doi: 10.1016/j.str.2019.01.017

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Biological Samples
Preparation of HO shell (Sutter et al., 2017) N/A
Chemicals, Peptides, and Recombinant Proteins
Nonidet P40 substitute Sigma-Aldrich Cat# 11332473001
Deposited Data
Coordinates HO shell main population this paper PDB ID 6MZX
Map HO shell main population this paper EMD-9309
Coordinates HO shell compacted this paper PDB ID 6MZY
Map HO shell compacted this paper EMD-9310
Coordinates for subvolume with BMC-TS this paper PDB ID 6N06
Map for subvolume with BMC-TS this paper EMD-9311
Coordinates BMC-TD (main population, closed) this paper PDB ID 6MZU
Map BMC-TD (main population, closed) this paper EMD-9307
Coordinates BMC-TD (main population, widened) this paper PDB ID 6MZV
Map BMC-TD (main population, widened) this paper EMD-9308
Coordinates BMC-TD (compacted population, open) this paper PDB ID 6N07
Map BMC-TD (compacted population, open) this paper EMD-9312
Coordinates BMC-T four positions (TDTSTSTS) this paper PDB ID 6N0F
Map BMC-T four positions (TDTSTSTS) this paper EMD-9314
Coordinates BMC-T four positions (TDTDTDTD) this paper PDB ID 6N09
Map BMC-T four positions (TDTDTDTD) this paper EMD-9313
Coordinates BMC-T four positions (TSTDTDTD) this paper PDB ID 6N0G
Map BMC-T four positions (TSTDTDTD) this paper EMD-9315
Map HO shell C1 refinement this paper EMD-9296
Coordinates HO shell X-ray structure (Sutter et al., 2017) PDB ID 5V74
Map HO shell low-resolution cryo-EM (initial reference) (Sutter et al., 2017) EMD-8747
Coordinates of ligand-bound CcmP, fully open (Larsson et al., 2017) PDB ID 5LT5
Coordinates of BMC-TS from Citrobacter freundii (Pang et al., 2011) PDB ID 3PAC
Coordinates of BMC-TS from Haliangium ochraceum (Aussignargues et al., 2016) PDB ID 5DIH
Software and Algorithms
MOTIONCOR2 (Zheng et al., 2017) N/A
CTFFIND 4 (Rohou and Grigorieff, 2015) N/A
LEGINON (Suloway et al., 2005) N/A
RELION 1.4 (Scheres, 2012) N/A
RELION 2.0 (Kimanius et al., 2016) N/A
FREALIGN 9 (Grigorieff, 2007; Grigorieff, 2016) N/A
PHENIX 1.14 (Adams et al., 2010) N/A
COOT 0.8.1 (Emsley et al., 2010) N/A
HMMSCAN (Eddy, 2008) N/A
CLUSTAL X (Larkin et al., 2007) N/A
HOMOLMAPPER (Rockwell and Lagarias, 2007) N/A
UCSF CHIMERA 1.11 (Pettersen et al., 2004) N/A
PYMOL 1.7 Schrödinger, LLC N/A
Other
C-flat 1.2/1.3 holey carbon films on Cu 400 mesh grid Protochips, Morrisville, USA Cat# CF-1.2/1.3–4C