Table 3.
Summary of small RNA sequencing and annotation in the six libraries
| C_1 | C_5 | C_9 | T_1 | T_5 | T_9 | |
|---|---|---|---|---|---|---|
| Raw reads | 15,286,088 | 14,558,545 | 15,081,645 | 16,628,582 | 19,808,737 | 14,525,366 |
| Clean reads | 14,816,133 | 13,952,977 | 14,223,817 | 14,122,942 | 19,289,704 | 14,150,546 |
| sRNA reads with 18–30 nt | 13,297,814 | 11,786,437 | 11,412,245 | 9,257,732 | 17,475,944 | 12,527,738 |
| Mapped sRNA reads | 6,624,449 | 7,232,363 | 7,210,889 | 6,924,934 | 9,807,723 | 7,212,813 |
| Known miRNA | 105,499 | 38,469 | 28,187 | 15,050 | 74,146 | 36,416 |
| Novel miRNA | 77,212 | 38,278 | 38,410 | 27,118 | 69,111 | 55,420 |
| rRNA | 796,814 | 1,041,300 | 1,150,503 | 1,136,897 | 1,328,107 | 1,006,974 |
| tRNA, | 1 | 0 | 0 | 0 | 0 | 0 |
| snRNA | 6057 | 7915 | 8336 | 6040 | 8069 | 17,190 |
| snoRNA, | 23,253 | 25,748 | 33,010 | 25,689 | 45,378 | 36,739 |
| ta-siRNA, | 60,908 | 29,424 | 27,270 | 12,129 | 47,678 | 32,416 |
| Others | 5,554,705 | 6,051,229 | 5,925,173 | 5,702,011 | 8,235,234 | 6,027,658 |