Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 May 8;20:231. doi: 10.1186/s12859-019-2865-7

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 1 — a SpliceV plot of SPPL2A expression in Akata cells. Coverage (exon level coverage; color intensity of each exon, single nucleotide level coverage; height of the horizontal line bisecting each exon) and forward splice junctions (arches above exons) was derived from sequencing a poly(A)-selected library preparation. Back-splice junctions (curves below exons) were obtained from sequencing a ribodepleted, RNase-R treated library preparation. b SpliceV plot of FARSA in Akata cells. All junctions and coverage were derived from a ribodepleted, RNase-R treated sample. c SpliceV plot of GSE1 expression in ribodepleted, RNase-R treated (back-splice junctions) and poly(A)-selected (coverage and canonical junctions) SNU719 cells. Predicted binding sites for RNA binding proteins, RBM3, HNRNPL, HNRNPA1, PTBP1 are plotted along the FARSA transcript (b) and RBFOX1, and MATR3 sites are plotted along the GSE1 transcript (c). ALU elements are marked in (c)