Table 3.

Expression of genes encoding NDH subunits, auxiliary proteins for the NDH complex, and PGR proteins

Gene name	1 day				7 days
	WT	sig2‐2	sig2‐2 /WTa	Cutoffb	WT	sig2‐2	sig2‐2 /WTa	Cutoffb
NDHM	5	6	0.18	No	126	90	−0.47	Yes
NDHN	13	18	0.47	Yes	134	97	−0.46	Yes
NDHO	15	29	0.90	Yes	183	165	−0.15	No
CRR23/NDHL	13	21	0.70	No	302	252	−0.26	No
CRR3	3	6	1.02	Yes	47	36	−0.39	Yes
CRR7	25	32	0.38	No	49	39	−0.32	Yes
NDH48/NDF1	8	10	0.35	No	146	119	−0.29	Yes
NDH45/NDF2	29	45	0.65	Yes	154	117	−0.40	Yes
NDF6	21	31	0.57	Yes	350	280	−0.32	Yes
NDH18	25	38	0.58	Yes	196	120	−0.71	Yes
CRR1	20	25	0.32	No	48	43	−0.14	No
CRR2	20	20	−0.06	No	9	10	0.05	No
CRR4	1	1	0.28	No	1	1	−0.23	No
CRR6/NDF3	30	39	0.37	Yes	55	67	0.28	Yes
CRR21	10	13	0.40	Yes	14	14	0.07	No
CRR22	6	5	−0.11	No	5	5	0.02	No
CRR28	7	10	0.47	No	6	6	0.20	No
CP31A	622	720	0.21	No	675	590	−0.19	No
PGR3	17	20	0.23	No	19	22	0.23	No
NDF4	23	29	0.37	No	117	75	−0.65	No
NDF5	14	17	0.28	No	26	21	−0.28	Yes
PIFI	12	15	0.35	No	140	125	−0.16	No
PPL2	11	14	0.30	No	145	120	−0.27	No
TLP21	109	121	0.15	No	158	112	−0.49	Yes
FKBP16‐2	3	7	1.03	Yes	101	59	−0.78	Yes
PsbQ‐like	8	10	0.40	No	188	144	−0.38	Yes
PGRL1A	23	29	0.32	No	312	266	−0.23	No
PGRL1B	5	6	0.15	No	16	18	0.16	No
PGR5	50	56	0.15	No	190	200	0.08	No

Genes were selected by >2‐fold change with significant cutoff (yes or no) in at least one sample between 1 and 7 days. NDH‐related genes were described previously (Suorsa et al., 2009). NDHM to NDH18: genes encoding NDH subunits; CRR1 to PsbQ‐like: genes encoding auxiliary proteins for the NDH complex; PGRL1A to PGR5: genes encoding PGR proteins.

^aFold change (in log2 scale).

^bSignificant with q‐value <.05.