Table 1. Summary statistics for chicken whole genome resequencing.
| Population | Code | Sequencing | N | Depth1 | nSNPs2 | π (%) 3 |
|---|---|---|---|---|---|---|
| Red jungle fowl (Thailand) | RJFt | Individual | 25 | 11.0 | 17,422,645 | 0.40 ± 0.18 |
| Red jungle fowl (India) | RJFi | Individual | 10 | 2.5 | 9,470,039 | 0.13 ± 0.07 |
| Broiler A | BRA | Individual | 20 | 11.5 | 12,355,756 | 0.34 ± 0.16 |
| Broiler B | BRB | Individual | 20 | 11.9 | 11,525,631 | 0.32 ± 0.16 |
| Pooled Broiler D | BRpD | Pooled | 25 | 40.0 | 10,498,251 | - |
| White layer | WL | Individual | 25 | 8.1 | 7,638,111 | 0.15 ± 0.12 |
| Brown layer | BL | Individual | 25 | 7.6 | 8,812,787 | 0.20 ± 0.14 |
| Rhode White (layer) | RWp | Pooled | 48 | 30.0 | 8,614,223 | - |
1Averaged over number of samples when sequenced individually.
2Number of polymorphic sites within population.
3Average ± standard deviation of nucleotide diversity estimated in 40kb windows.