Table 6.
Examples of modules identified by our method with lower CCIs and higher PPI densities
| Dataset | Module(nGenes) | nGenes Overlap | CCI | PPI density |
|---|---|---|---|---|
| GSE54002 | LRR5(86) | 16 | 0.457 | 3.81e-03 |
| PCC14(28) | 0.498 | 0 | ||
| GSE54002 | LRR5(86) | 54 | 0.457 | 3.81e-03 |
| WGCNA18(94) | 0.467 | 2.38e-03 | ||
| GSE54002 | LRR7(78) | 18 | 0.340 | 3.12e-03 |
| PCC33(20) | 0.534 | 0 | ||
| GSE54002 | LRR7(78) | 38 | 0.340 | 3.12e-03 |
| WGCNA26(77) | 0.389 | 1.42e-03 | ||
| GSE102484 | LRR17(65) | 15 | 0.291 | 2.46e-03 |
| PCC24(28) | 0.400 | 0 | ||
| GSE102484 | LRR17(65) | 28 | 0.291 | 2.46e-03 |
| WGCNA23(47) | 0.382 | 1.03e-03 | ||
| GSE102484 | LRR8(96) | 83 | 0.359 | 5.68e-03 |
| WGCNA12(115) | 0.367 | 4.17e-03 |
nGenes: number of genes in the module nGenes Overlap: number of genes in both modules