Table 4.
Evaluation of secretion pathways and sub-cellular location of SPs
| Signal peptides | Secretion pathway |
Reliability
Score (%) |
Cytoplasmic | Membrane |
Secreted
(extracellular) |
Periplasmic | Final prediction site |
|---|---|---|---|---|---|---|---|
| PHOE_ECOLI | Sec | 0.995 | 9.91 | 0.03 | 0.00 | 00.06 | Cytoplasmic |
| OMPA_ECOLI | Sec | 0.999 | 9.82 | 0.09 | 0.03 | 0.06 | Cytoplasmic |
| OMPF_ECOLI | Sec | 0.998 | 9.90 | 0.04 | 0.00 | 0.06 | Cytoplasmic |
| OMPT_ECOLI | Sec | 0.991 | 9.93 | 0.02 | 0.00 | 0.05 | Cytoplasmic |
| OMPC_ECOLI | Sec | 0.990 | 9.84 | 0.09 | 0.00 | 0.07 | Cytoplasmic |
| ELBH_ECOLX | Sec | 0.985 | 9.80 | 0.12 | 0.02 | 0.06 | Cytoplasmic |
| LAMB_ECOLI | Sec | 0.998 | 9.92 | 0.02 | 0.00 | 0.06 | Cytoplasmic |
| MALE_ECOLI | Sec | 0.997 | 9.92 | 0.06 | 0.00 | 0.02 | Cytoplasmic |
| DSBA_ECOLI | Sec | 0.994 | 9.83 | 0.11 | 0.00 | 0.05 | Cytoplasmic |
| DGAL_ECOLI | Sec | 0.999 | 9.83 | 0.11 | 0.00 | 0.06 | Cytoplasmic |
| TORT_ECOLI | Sec | 0.990 | 9.96 | 0.02 | 0.00 | 0.03 | Cytoplasmic |
| TOLB_ECOLI | Sec | 0.991 | 9.85 | 0.11 | 0.00 | 0.04 | Cytoplasmic |
| HSTI_ECOLX | Sec | 0.999 | 9.62 | 0.10 | 0.24 | 0.04 | Cytoplasmic |
| BLAT_ECOLX | Sec | 0.996 | 9.89 | 0.00 | 0.07 | 0.03 | Cytoplasmic |
| ASPG2_ECOLI | Sec | 0.999 | 9.80 | 0.13 | 0.01 | 0.06 | Cytoplasmic |
| CEXE_ECOLX | Sec | 0.993 | 9.82 | 0.06 | 0.07 | 0.05 | Cytoplasmic |
| PTRA_ECOLI | Sec | 0.995 | 9.82 | 0.12 | 0.00 | 0.05 | Cytoplasmic |
| FKBA_ECOLI | Sec | 0.992 | 9.81 | 0.15 | 0.00 | 0.04 | Cytoplasmic |
| LPP_ECOLI | Sec | 0.968 | 9.89 | 0.05 | 0.00 | 0.06 | Cytoplasmic |
| THIB_ECOLI | Sec | 0.997 | 9.86 | 0.09 | 0.00 | 0.06 | Cytoplasmic |
| TAUA_ECOLI | Sec | 0.998 | 9.90 | 0.04 | 0.00 | 0.06 | Cytoplasmic |
| PSPE_ECOLI | Sec | 0.999 | 9.72 | 0.10 | 0.13 | 0.05 | Cytoplasmic |
| PPA_ECOLI | Sec | 1.000 | 9.82 | 0.12 | 0.00 | 0.06 | Cytoplasmic |
| OMPP_ECOLI | Sec | 0.997 | 9.93 | 0.02 | 0.00 | 0.05 | Cytoplasmic |
| DRAA_ECOLX | Sec | 1.000 | 9.85 | 0.08 | 0.00 | 0.06 | Cytoplasmic |
| OMPW_ECOLI | Sec | 1.000 | 9.82 | 0.10 | 0.02 | 0.06 | Cytoplasmic |
| PBP7_ECOLI | Sec | 0.997 | 9.83 | 0.12 | 0.00 | 0.05 | Cytoplasmic |
| NIKA_ECOLI | Sec | 0.996 | 9.88 | 0.07 | 0.00 | 0.06 | Cytoplasmic |
| LPTA_ECOLI | Sec | 1.000 | 0.00 | 0.60 | 1.12 | 8.28 | Periplasmic |
| SUBF_BACSU | Sec | 0.996 | 2.22 | 1.85 | 5.77 | 0.16 | Secreted |
| CWBA_BACSU | Sec | 0.999 | 9.94 | 0.00 | 0.02 | 0.04 | Cytoplasmic |
| QOX2_BACSU | TM segment | 0.788 | 9.95 | 0.00 | 0.02 | 0.03 | Cytoplasmic |
| CHIS_BACSU | Sec | 0.975 | 2.20 | 0.84 | 6.77 | 0.19 | Secreted |
| SACB_BACAM | Sec | 0.999 | 1.04 | 0.00 | 0.00 | 8.96 | Periplasmic |
| BLAC_BACSU | Sec | 0.995 | 2.36 | 0.00 | 2.41 | 5.23 | membrane bound Periplasmic |
| GUB_BACAM | Sec | 0.998 | 9.93 | 0.00 | 0.03 | 0.04 | Cytoplasmic |
| CDGT_BACST | Sec | 0.958 | 1.37 | 1.69 | 6.94 | 0.00 | Secreted |
| THER_BACST | Sec | 0.997 | 9.74 | 0.03 | 0.19 | 0.04 | Cytoplasmic |
| BLAC_BACLI | Sec | 0.992 | 9.91 | 0.03 | 0.00 | 0.06 | Cytoplasmic |
| AMY_BACLI | Sec | 0.999 | 0.00 | 1.57 | 8.43 | 0.00 | Secreted |