Table 4.

Statistical comparison of the phylogenies obtained using the MLST loci of both schemes to the two reference trees obtained with genome-wide SNPS and core genes.

Reference tree	Tree	Matching clusters	R-F clusters	SH test
				D (LH)	SD	P-value
Core genome	Oxford	17149	653	−560419,8575	4728,447118	<1%
Core genome	Pasteur	22348	669	−1114308,906	14114,36962	<1%
SNP	Oxford	15958	654	−226406,4429	2748,796098	<1%
SNP	Pasteur	22679	669	−576957,8653	10208,8312	<1%
SNP	Core genome	6197	497	−12777,39132	988,204341	<1%
Core genome	SNP	6197	497	−34788,30168	1285,842838	<1%