Table 2.
Sequence identities (%) of nt and aa between SH12/DH13 and other novel WRVs, classical WRVs, and chicken ARVs
| Gene/Protein | SH12 vs novel WRVs | SH12 vs classical WRVs | SH12 vs chicken ARVs | SH12 vs DH13 | DH13 vs novel WRVs | DH13 vs classical WRVs | DH13 vs chicken ARVs | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| nt | aa | nt | aa | nt | aa | nt | aa | nt | aa | nt | aa | nt | aa | |
| λA | 86.3–98.8 | 97.8–99.8 | 85.6–86.7 | 97.0–97.4 | 77.2–77.8 | 94.5–95.0 | 99.6 | 99.8 | 86.3–98.8 | 97.8–99.9 | 85.4–86.6 | 97.1–97.4 | 77.2–77.7 | 94.6–95.0 |
| λB | 87.5–98.2 | 97.2–99.5 | 87.3–88.3 | 96.9–97.9 | 75.6–76.9 | 91.0–91.2 | 97.7 | 99.0 | 87.1–98.2 | 97.0–99.4 | 87.5–88.3 | 96.7–97.8 | 75.4–77.0 | 90.7–91.0 |
| λC | 96.4–99.1 | 98.4–99.5 | 79.0–80.7 | 92.0–93.3 | 70.1–70.4 | 79.0–80.0 | 99.2 | 99.1 | 96.3–99.1 | 98.2–99.5 | 79.0–80.6 | 91.8–93.3 | 70.3–70.5 | 79.0–80.0 |
| μA | 95.9–98.5 | 97.1–99.5 | 79.7–95.1 | 90.8–97.0 | 73.3–73.6 | 85.9–87.0 | 98.0 | 98.9 | 95.6–98.2 | 96.9–99.0 | 79.8–94.9 | 91.0–96.7 | 73.5–73.7 | 86.2–87.0 |
| μB | 88.1–98.5 | 96.1–99.4 | 63.8–67.9 | 76.3–76.7 | 76.7–77.5 | 89.6–90.0 | 99.1 | 99.1 | 88.0–98.4 | 95.9–99.1 | 64.0–68.0 | 76.3–76.7 | 76.6–77.1 | 89.3–90.0 |
| μNS | 94.5–99.0 | 96.1–98.9 | 79.2–86.0 | 90.1–93.9 | 71.5–71.7 | 79.7–80.2 | 98.1 | 97.6 | 94.1–98.6 | 95.6–98.3 | 79.1–86.0 | 89.4–93.5 | 71.3–71.5 | 79.5–80.0 |
| p10 | 95.6–99.0 | 99.0–100 | 38.1–39.5 | 9.6–10.8 | 53.5–54.7 | 33.0–34.0 | 98.6 | 100 | 95.6–99.0 | 99.0–100 | 37.4–38.8 | 9.6–10.8 | 37.9–54.4 | 33.0–34.0 |
| p17/p18 | 98.3–99.5 | 93.9–98.3 | – | – | 10.9–11.6 | 14.9–17.1 | 99.4 | 97.8 | 98.2–99.5 | 93.9–98.3 | – | – | 10.9–11.6 | 15.5–16.6 |
| σC | 91.2–99.0 | 95.0–98.4 | 51.7–53.0 | 42.0–42.4 | 40.8–43.0 | 27.4–28.1 | 98.4 | 98.4 | 90.5–98.1 | 94.4–97.5 | 51.7–53.0 | 40.9–41.3 | 41.0–43.3 | 28.1–28.7 |
| σA | 88.2–99.4 | 97.6–100 | 87.2–95.4 | 96.4–99.0 | 76.8–77.5 | 90.4–91.8 | 99.1 | 99.5 | 87.3–99.1 | 97.1–99.5 | 86.6–94.9 | 95.9–98.6 | 76.8–77.5 | 89.9–91.3 |
| σB | 94.6–99.6 | 94.3–100 | 65.6–67.1 | 68.7–69.2 | 64.9–66.2 | 68.4–69.5 | 99.6 | 99.2 | 94.2–99.3 | 93.5–99.2 | 65.3–66.7 | 68.1–68.7 | 64.5–65.8 | 67.8–68.9 |
| σNS | 93.0–98.6 | 96.7–99.2 | 84.2–91.0 | 95.6–97.0 | 78.2–78.3 | 90.2–90.5 | 99.8 | 99.5 | 92.4–98.4 | 96.2–98.6 | 84.1–90.9 | 95.1–96.5 | 78.0–78.1 | 89.6–89.9 |
novel WRVs: waterfowl-origin reovirus isolates ZJ00M, TH11, 091, NP03, HN5d, SD-12, J18 and 03G
classical WRVs: waterfowl-origin reovirus isolates D20/99, 815–12, ZJ2000M, D1546 and D2044
chicken ARVs: chicken-origin reovirus isolates 138, C98, S1133 and T-98
nt nucleotide sequence
aa amino acid sequence