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. 2019 Mar;8(Suppl 1):S64–S77. doi: 10.21037/tau.2019.03.01

Table S1. An overview of the prostate cancer datasets in GEO, ordered by number of samples.

DataSet Title Type Platform Series No. of samples
GDS2545 Metastatic prostate cancer (HG-U95A) Expression profiling by array, count, 4 tissue sets GPL8300 GSE6919 171
GDS2546 Metastatic prostate cancer (HG-U95B) Expression profiling by array, count, 4 tissue sets GPL92 GSE6919 167
GDS2547 Metastatic prostate cancer (HG-U95C) Expression profiling by array, count, 4 tissue sets GPL93 GSE6919 164
GDS3289 Prostate cancer progression at the cellular level Expression profiling by array, log2 ratio, 2 cell type, 6 disease state, 14 other sets GPL2013 GSE6099 104
GDS4395 External beam radiation therapy effect on prostate cancer patients: peripheral white blood cells Expression profiling by array, count, 20 individual, 2 protocol, 8 time sets GPL570 GSE30174 80
GDS4109 Recurrent and non-recurrent prostate cancer primary tumors Expression profiling by array, count, 2 disease state sets GPL96 GSE25136 79
GDS2384 Xenograft model of prostate carcinoma progression Expression profiling by array, log2 ratio, 4 disease state, 3 other, 10 protocol, 14 specimen sets GPL3349 GSE4084 52
GDS5267 Cyclin-dependent kinase inhibitor R547 effect on prostate cancer cell line: dose response and time course Expression profiling by array, count, 3 agent, 4 dose, 4 time sets GPL570 GSE15392 45
GDS1746 Primary epithelial cell cultures from prostate tumors Expression profiling by array, count, 7 disease state, 2 protocol sets GPL96 GSE3868 30
GDS4952 BET bromodomain inhibitor I-BET762 effect on prostate cancer cell lines: dose response Expression profiling by array, count, 4 cell line, 3 dose sets GPL570 GSE56352 24
GDS4114 Reactive stroma of breast and prostate cancer Expression profiling by array, transformed count, 2 disease state, 2 tissue sets GPL570 GSE26910 24
GDS4824 Prostate cancer Expression profiling by array, count, 2 disease state, 3 genotype/variation sets GPL570 GSE55945 21
GDS1390 Prostate cancer progression after androgen ablation Expression profiling by array, count, 2 disease state sets GPL96 GSE2443 20
GDS1439 Prostate cancer progression Expression profiling by array, count, 3 disease state sets GPL570 GSE3325 19
GDS4964 Telomere-elongated, prostate cancer cells Expression profiling by array, transformed count, 2 genotype/variation, 2 protocol sets GPL570 GSE41559 16
GDS4158 LNCap prostate cancer cell line response to loss of COnstitutive Photomorphogenic-1 and ETV1 Expression profiling by array, transformed count, 3 genotype/variation sets GPL570 GSE27914 16
GDS4159 LNCap prostate cancer cell line response to loss of COnstitutive Photomorphogenic-1, ETV1 and c-JUN Expression profiling by array, transformed count, 3 genotype/variation sets GPL570 GSE27914 15
GDS3358 Androgen deprivation effect on LNCaP prostate cancer cells: time course Expression profiling by array, count, 2 growth protocol, 6 time sets GPL570 GSE8702 15
GDS535 Prostate cancer antiandrogen resistance Expression profiling by array, count, 2 cell type sets GPL91 GSE847 14
GDS6100 MicroRNA-135b overexpression effect on prostate cancer cell line: time course Expression profiling by array, transformed count, 2 protocol, 3 time sets GPL10558 GSE57820 12
GDS4957 FOXA1 overexpression effect on prostate cancer cell line Expression profiling by array, transformed count, 2 protocol sets GPL10558 GSE49153 12
GDS4951 Lysophosphatidic acid effect on breast and prostate cancer cell lines Expression profiling by array, count, 2 agent, 3 cell line sets GPL570 GSE56265 12
GDS4107 KUCaP-2 xenograft model of castration-resistant prostate cancer: various stages Expression profiling by array, transformed count, 3 development stage sets GPL570 GSE21887 12
GDS3973 Docetaxel resistant prostate cancer cell line Expression profiling by array, transformed count, 4 cell line sets GPL570 GSE33455 12
GDS3861 Synthetic androgen R1881 effect on transcription factor SRF-deficient prostate cancer cells Expression profiling by array, transformed count, 2 agent, 2 protocol sets GPL570 GSE22606 12
GDS2971 Hemiasterlin analog HTI-286 effect on docetaxel-resistant prostate cancer cell line Expression profiling by array, log2 ratio, 2 agent sets GPL3877 GSE8325 12
GDS5072 High grade prostate cancer Expression profiling by array, count, 2 disease state, 3 other sets GPL570 GSE45016 11
GDS5440 Androgen effect on carboxyl terminal-binding protein 2-deficient prostate cancer cell line Expression profiling by array, transformed count, 2 agent, 4 genotype/variation sets GPL6244 GSE58309 10
GDS3111 Prostate cancer cell line response to dihydrotestosterone: time course Expression profiling by array, count, 2 agent, 3 time sets GPL570 GSE7868 9
GDS3634 miR-205 expression effect on prostate cancer cell line Expression profiling by array, count, 2 protocol sets GPL6104 GSE11701 8
GDS3095 Zinc effect on malignant and non-malignant prostate cell lines: time course Expression profiling by array, count, 2 agent, 2 cell line, 4 time sets GPL2986 GSE5590 8
GDS2034 Prostate cancer cell line LNCaP response to synthetic androgen R1881: time course Expression profiling by array, log2 ratio, 4 time sets GPL3349 GSE4027 8
GDS1736 Arachidonic acid effect on prostate cancer cells Expression profiling by array, count, 2 agent sets GPL96 GSE3737 8
GDS1699 Androgen sensitive and insensitive prostate cancer cell lines: expression profiles Expression profiling by array, log2 ratio, 8 cell line, 2 cell type sets GPL3341 GSE4016 8
GDS5805 Peptidyl-prolyl cis/trans isomerase Pin1 deficiency effect on prostate cancer cells Expression profiling by array, transformed count, 2 cell line, 3 protocol sets GPL6244 GSE67457 6
GDS5222 U2OS osteosarcoma cell line response to strigolactone analogs ST362 and MEB55: 24 hours Expression profiling by array, count, 3 agent sets GPL10558 GSE54820 6
GDS5221 U2OS osteosarcoma cell line response to strigolactone analogs ST362 and MEB55: 6 hours Expression profiling by array, count, 3 agent sets GPL10558 GSE54820 6
GDS5173 G-protein coupled receptor kinase 3 expression effect on prostate cancer cell line Expression profiling by array, count, 2 agent sets GPL6883 GSE36022 6
GDS4124 Genetic reprogramming of prostate cancer-associated stromal cells Expression profiling by array, transformed count, 5 cell type, 2 protocol sets GPL570 GSE35373 6
GDS4121 Hepatocyte growth factor treatment of prostate cancer DU145 cell line: time course Expression profiling by array, count, 2 agent, 3 time sets GPL570 GSE16659 6
GDS4113 Late passage LNCaP prostate tumor cells treated with androgen receptor shRNA or androgen R1881 Expression profiling by array, count, 3 genotype/variation sets GPL570 GSE22483 6
GDS2865 Metastatic prostate tumor model Expression profiling by array, count, 2 disease state sets GPL96 GSE7930 6
GDS4123 Isoflavone and 3,3’-diindolylmethane effect on C4-2B prostate cancer cells Expression profiling by array, count, 3 agent, 4 time sets GPL570 GSE35324 5
GDS5804 PI3K/mTOR Inhibitor NVP-BEZ235 and taxotere effects on prostate cancer xenograft tumors Expression profiling by array, count, 4 agent sets GPL570 GSE49232 4
GDS5606 Androgen effect on runt-related transcription factor 1-deficient prostate cancer cell line Expression profiling by array, transformed count, 2 agent, 2 genotype/variation sets GPL6244 GSE62454 4
GDS5373 miR-221 expression effect on prostate cancer cell line Expression profiling by array, count, 2 protocol sets GPL570 GSE45627 4
GDS4846 MED1 overexpression effect on prostate cancer cell line Expression profiling by array, count, 2 protocol sets GPL571 GSE41150 4
GDS4829 VprBP depletion effect on prostate cancer cell line Expression profiling by array, count, 2 genotype/variation sets GPL10558 GSE50414 4
GDS3797 beta-TrCP inhibition and androgen ablation effects on prostate cancer cell line LAPC4 Expression profiling by array, transformed count, 2 genotype/variation, 2 growth protocol sets GPL571 GSE19141 4
GDS1697 DNA methyltransferase inhibitor 5-aza-2'-deoxycytidine effect on prostate cancer cell lines Expression profiling by array, log2 ratio, 4 cell line sets GPL3295 GSE4089 4
GDS1423 Lunasin effect on prostate epithelial cells Expression profiling by array, count, 2 agent, 2 disease state sets GPL96 GSE2992 4