Table 1.
Gut Microbiota Donors Included in Gnotobiotic Experiments
| Microbiota Name |
Donor Phenotype |
Active/ Remission |
Cohort | Subject ID | B6 Immune Phenotyping |
RagTCT Model |
BioSample Accession |
|---|---|---|---|---|---|---|---|
| HD2017 | healthy | NA | NYC | 1001099 | C(4) | C(5) | SAMN07747250 |
| HD2018 | healthy | NA | NYC | 1001136 | C(9),S(4) | C(6) | SAMN07747252 |
| HD2019 | healthy | NA | NYC | 1001217 | C(16) | C(5),S(4) | SAMN07747269 |
| HD2020 | healthy | NA | NYC | 1001262 | C(3) | C(5) | SAMN07747287 |
| HD2021 | healthy | NA | NYC | 1001271 | C(6) | C(4),S(5) | SAMN07747295 |
| HD2022 | healthy | NA | NYC | 1001275 | C(3) | C(5) | SAMN07747304 |
| HD2023 | healthy | NA | NYC | 1001283 | C(4) | C(6) | SAMN07747317 |
| CD2028 | CD | remission | NYC | 1100102 | S(5) | S(5) | SAMN07750457 |
| CD2005 | CD | active | NYC | 1101004 | S(3) | S(5) | SAMN07750563 |
| UC2029 | UC | active | NYC | 1101029 | S(3) | S(3) | SAMN07750571 |
| UC2030 | UC | active | NYC | 1101312 | S(6) | C(4),S(5) | SAMN07750587 |
| UC2031 | UC | remission | NYC | 1101437 | S(3) | S(5) | SAMN07750596 |
| CD2006 | CD | active | NYC | 1101653 | S(5) | C(6),S(5) | SAMN07750626 |
| UC2032 | UC | remission | NYC | 1102157 | S(2) | S(5) | SAMN07750657 |
| CD1001 | CD | remission | LA | BSD2780_06_1687 | C(8),S(7) | C(12),S(5) | SAMN08636700 |
| UC1024 | UC | remission | LA | BSD2780_06_1688 | C(5) | C(20),S(6) | SAMN08636698 |
| HD1007 | healthy | NA | LA | BSD2780_06_1689 | C(7) | C(12) | SAMN08636702 |
| UC1025 | UC | remission | LA | BSD2780_12_0874 | C(5) | – | SAMN08636705 |
| CD1002 | CD | remission | LA | BSD2780_12_0875 | C(5) | C(8),S(5) | SAMN08636696 |
| HD1008 | healthy | NA | LA | BSD3178_07_0968 | S(4) | S(4) | SAMN08636690 |
| CD1003 | CD | remission | LA | BSD3178_07_1175 | S(3) | C(7),S(8) | SAMN08636694 |
| UC1026 | UC | remission | LA | BSD3178_07_1176 | S(3) | C(5),S(9) | SAMN08636692 |
| HD1009 | healthy | NA | LA | BSD3178_07_1237 | – | S(4) | SAMN08636695 |
| HD1016 | healthy | NA | LA | BSD3178_12_0969 | S(4) | – | SAMN08636688 |
| HD1010 | healthy | NA | LA | BSD3448_08_0949 | S(3) | C(6),S(6) | SAMN08636693 |
| UC1027 | UC | remission | LA | BSD3448_08_0978 | S(2) | S(10) | SAMN08636689 |
| HD1011 | healthy | NA | LA | BSD3448_12_0968 | S(2) | S(5) | SAMN08636691 |
| HD1012 | healthy | NA | LA | BSD3448_12_1246 | S(2) | S(5) | SAMN08636687 |
| CD1004 | CD | remission | LA | BSD4362_10_1914 | S(4) | S(12) | SAMN08636697 |
| HD1004 | healthy | NA | LA | BSD4362_11_0056 | S(3) | S(5) | SAMN08636704 |
| HD1014 | healthy | NA | LA | BSD4362_11_0057 | S(3) | S(6) | SAMN08636701 |
| HD1015 | healthy | NA | LA | BSD4362_12_1006 | – | S(7) | SAMN08636699 |
Abbreviations: C, gnotobiotic mice colonized with arrayed culture collection derived from donor fecal microbiota; S, gnotobiotic mice colonized with clarified complete stool microbiota from donor. Numbers in parentheses indicate the number of mice per group.