output_folder	content
output folder/aligned	Contains an alignment .sam, alignment .bam, sorted .bam, and .bai index file for each sample.
output_folder/fastq	Merged .fastq.gz files for each sample.
output_folder/identified	Contains tab-delimited .txt files for each sample containing the identified DSBs, control DSBs, filtered DSBs, and read quantification.
output_folder/visualization	Contains an .svg vector image representing an alignment of all detected off-targets to the target-site for each sample.