Table 3.
The nucleotide identity (%) of partial RdRp–capsid gene (1057 bp)
| Strains | Collection date | Sample type | Strains | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| WH2017-36 | WH2017-151 | WH2017-152 | WH2017-153 | WH2017-156 | WH2017-158 | WH2017-160 | WH2017-162 | WH2017-170 | WH2017- NoV5121 |
142,700 | ZHITHC-12 | CUHK-NS-463 | 15-AP-1 | CAU-267 | Kawasaki308 | Gaithersburg | |||
| WH2017-36 | 17-Feb-2017 | Feces | 100 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-151 | 8-May-2017 | Feces | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-152 | 8-May-2017 | Feces | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-153 | 8-May-2017 | Feces | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-156 | 8-May-2017 | Feces | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-158 | 8-May-2017 | Anal swabs | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-160 | 8-May-2017 | Anal swabs | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-162 | 8-May-2017 | Anal swabs | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017-170 | 11-May-2017 | Feces | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| WH2017- NoV5121 | 8-May-2017 | Water | 99.8 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 99.7 | 99.8 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| 142,700 | 2014 | No data | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 100 | 99.7 | 99.8 | 99.8 | 99.6 | 99.4 | 99.6 |
| ZHITHC-12 | 2015 | No data | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.7 | 100 | 99.9 | 99.9 | 99.7 | 99.5 | 99.7 |
| CUHK- NS-463 | 5-Dec-2014 | No data | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.8 | 99.9 | 100 | 100 | 99.8 | 99.6 | 99.8 |
| 15-AP-1 | Feb-2015 | Feces | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.8 | 99.9 | 100 | 100 | 99.8 | 99.6 | 99.8 |
| CAU-267 | 2015 | Feces | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.6 | 99.7 | 99.8 | 99.8 | 100 | 99.4 | 99.6 |
| Kawasaki308 | 2015 | Feces | 99.5 | 99.5 | 99.5 | 99.5 | 99.5 | 99.5 | 99.5 | 99.5 | 99.5 | 99.5 | 99.4 | 99.5 | 99.6 | 99.6 | 99.4 | 100 | 99.4 |
| Gaithersburg | 25-Nov-2014 | Feces | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.7 | 99.6 | 99.7 | 99.8 | 99.8 | 99.6 | 99.4 | 100 |