| ZIKV | Zika virus; |
| HCV | Hepatitis C Virus; |
| DENV | Dengue virus; |
| WNV | West Nile virus; |
| JEV | Japanese Encephalitis Virus; |
| DAA | direct-acting antiviral agents; |
| NSP | non-structural protein; |
| NS3 | non-structural protein 3; |
| NS3PRO | non-structural protein 3 protease; |
| NS3HEL | non-structural protein 3 helicase; |
| ssRNA | single-stranded RNA; |
| NTP | nucleoside triphosphate; |
| PDB | Protein Data Bank; |
| NCI | National Cancer Institute; |
| SBDD | Structure-based drug discovery; |
| SAR | Structure-activity relationship; |
| SFXC | Surflex-Dock algorithm; |