Table 1.
Overview of larger genomic differences between strain B. diazoefficiens 110spc4 compared to the NCBI B. diazoefficiens USDA 110 reference genome (see also Figure 1).
| Change in 110spc4 | Start pos. in USDA 110 (RefSeq) | Start pos. in 110spc4 | Length (bp) | Gene(s) affected or contained in inserted region | Gene, product interrupted (CDS in reference) |
|---|---|---|---|---|---|
| DEL | 1 | 1 | 70,634 | 78 CDS | Together with the deletion below (next row), 223 CDS are affected. See Supplementary Table S1 |
| DEL | 8,974,768 | 8,910,608 | 131,060 | 145 CDS | Together with the deletion above (previous row), 223 CDS are affected. See Supplementary Table S1 |
| INS | 483,970 | 413,137 | 1,532 | Transposase (Bdiaspc4_01920) | No CDS in USDA 110 reference |
| INS | 1,699,880 | 1,630,578 | 1,370 | Transposase (Bdiaspc4_07865) | No CDS in USDA 110 reference |
| INS | 1,806,987 | 1,739,052 | 1,915 | Group II intron reverse transcriptase (Bdiaspc4_08330) | No CDS in USDA 110 reference |
| INS | 1,936,754 | 1,870,731 | 1,370 | Transposase (Bdiaspc4_09015) | Bll1778a, unknown protein (1,936,357–1,937,313) |
| INS | 3,936,542 | 3,872,887 | 305 | Hypothetical protein (Bdiaspc4_18405) | Bll3563b, unknown protein (3,930,196–3,940,521) |
a
Bll1778 is a hypothetical protein of 318 amino acids; it has no PFAM-A protein domains.
b
Bll3563 is a large protein (3441 aa) with many VCBS domains (suggested role in adhesion).
DEL, deletion; INS, insertion.