Table 1. Information on the sequences and specimens used in this study.
| Species | Location (abbr. and site number) | Drainage | Haplotype NO. | Voucher NO. | Genbank accession number | Specimens examined Catalog & total number | |
| Cytb | D-Loop | ||||||
| Triplophysa stenura | Tuotuohe, Qinghai (TTH) (1) | Jinsha R. | H5 | 20040803001 | KJ650345 | KJ650374 | 2004002175-2004002195 (21) |
| H6 | 20040803002 | KJ650370 | KJ650394 | ||||
| H7 | 20040803003 | KJ650369 | KJ650393 | ||||
| H8 | 20040803007 | KJ650368 | - | ||||
| H4 | 20040803008 | KJ650367 | KJ650392 | ||||
| Xiaozhongdian, Yunnan(XZDH) (2) | Jinsha R. | H1 | 20040620001 | JN837657 | KJ650397 | ||
| H2 | 20040620002 | KJ650353 | KJ650379 | ||||
| H3 | 20040620003 | KJ650371 | KJ650395 | ||||
| H4 | 20040620004 | KJ650352 | KJ650378 | ||||
| Yongsheng, Yunnan (YS) (3) | Jinsha R. | H11 | 041106046 | KJ650365 | KJ650390 | ||
| H12 | 041106047 | KJ650364 | KJ650389 | ||||
| H12 | 041106048 | KJ650363 | KJ650388 | ||||
| H11 | 041106049 | KJ650362 | KJ650387 | ||||
| Xiangcheng, Sichuan (XC) (4) | Jinsha R. | H13 | YJ2009033 | KJ650361 | KJ650386 | ||
| H13 | YJ2009034 | KJ650360 | - | ||||
| H14 | YJ2009035 | KJ650359 | KJ650385 | ||||
| H13 | YJ2009036 | KJ650358 | KJ650384 | ||||
| Batang, Sichuan (BT) (5) | Jinsha R. | H17 | YJ2009079 | KJ650357 | KJ650383 | 2009003584-2009003590 (7) | |
| H16 | YJ2009080 | KJ650356 | KJ650382 | ||||
| H6 | YJ2009081 | KJ650373 | - | ||||
| H15 | YJ2009082 | KJ650350 | KJ650376 | ||||
| Baiyu, Sichuan (BY) (6) | Jinsha R. | H18 | 2006009504 | KJ650344 | - | 2006009504-2006009508 (5) | |
| H16 | 2006009505 | KJ650372 | KJ650396 | ||||
| H19 | 2006009507 | KJ650355 | KJ650381 | ||||
| Shigu, Yunnan (SG) (7) | Jinsha R. | - | - | - | 2011000001-2011000008 (12) | ||
| Anduoqu, Tibet (ADQ) (8) | Nu R. | H9 | 20040804001 | KJ650366 | KJ650391 | 2004002201-2004002213 (13) | |
| H10 | 20040804002 | KJ650351 | KJ650377 | ||||
| Gongshan, Yunnan (GS) (9) | Nu R. | H21 | - | KJ650348 | - | 2000198-2000199 (2) | |
| H20 | CJF1806 | KJ650354 | KJ650380 | ||||
| Baxiu, Tibet (BX) (10) | Nu R. | H22 | - | KJ650347 | - | ||
| Naqu, Tibet (NQ) (11) | Nu R. | H23 | - | KJ650349 | - | ||
| Changdu, Tibet (CD) (12) | Lancang R. | H24 | - | KJ650346 | KJ650375 | 20100042-20100048 (8) | |
| Yangbi, Yunnan (YB) (13) | Lancang R. | - | - | - | 1974000595-1974000617 (23) | ||
| GB1* | H25 | DQ105247 | DQ105319 | ||||
| GB2* | H26 | DQ105246 | DQ105318 | ||||
| T. stewarti | Milin, Tibet | DQ105248 | |||||
| T. orientalis | Xining, Qinghai | DQ105251 | |||||
| T. stoliczkaeas | Gangca, Qinghai | DQ105249 | |||||
*Sequence obtained from Genbank.