Table 1.
Summary of the transcriptome data from PacBio RSII platform and Illumina Hiseq platform
| Platform | |
|---|---|
| Illumina Hiseq (n = 15) | |
| Raw reads (average) | 5,562,602.5 |
| Clean reads (average) | 53,312,258.5 |
| Clean bases (G, total) | 119.97 |
| Base error rate (average) | 0.015% |
| Q30 (average) | 93.46% |
| GC content (average) | 47.05% |
| Unigenes annotated in at least one database (NR, NT, KO, Swissprot, Pfam, GO, KOG) | 129,325 |
| Unigenes annotated in all databeses | 29,191 |
| Total unigenes | 130,553 |
| TF number | 8006 (6.19%) |
| PacBio RSII (n = 15) | |
| Total CCS | 617,063 |
| Full length reads | 467,672 (75.9%) |
| FLNC reads | 434,967 (70.5%) |
| Average FLNC read length | 1720 bp |
| Consensus reads | 199,106 |
| Subreads base (G) | 13.46 |
| Subreads number | 14,267,901 |
| Average subreads length | 944 bp |
| N50 | 1572 |
| Total unigenes annotated in at least one database (NR, NT, KOG, Swissprot, Pfam, GO, KEGG) | 140,196 |
| Total unigenes | 44,938 |
| TF number | 9407 (5.08%) |
CCS circular consensus sequences, FLNC full-length non chimera, GO Gene Ontology, KEGG Kyoto Encyclopedia of Genes and Genomes, KO KEGG Ortholog database, KOG euKaryotic Orthologous Groups, Nr NCBI non-redundant protein sequences, Nt NCBI non-redundant nucleotide sequences, Pfam Protein family, TF transcription factors