Table 1.
NCBI BioSample IDa | Matrix | Yearb | Locationb | Serovar | Sequence type (ST) | tdh/trh | |
---|---|---|---|---|---|---|---|
1 | SAMN02368229 | Oyster | 2007 | FL | O4:Kuk | 536 | –/– |
2 | SAMN02368232 | Oyster | 2007 | FL | O11:Kuk | 734 | –/– |
3 | SAMN02368266 | Oyster | 2007 | FL | O4:K42 | 1146 | –/– |
4 | SAMN02368267 | Oyster | 2007 | FL | O11:Kuk | 1153 | –/– |
5 | SAMN02368274 | Oyster | 2007 | FL | O5:Kuk | 743 | –/– |
6 | SAMN02368227 | Oyster | 2007 | LA | O4:K10 | 732 | –/– |
7 | SAMN03358821 | Oyster | 2007 | PEI, Canada | O11:Kuk | 1152 | –/– |
8 | SAMN02368264 | Oyster | 2007 | PEI, Canada | O11:Kuk | 1152 | –/– |
9 | SAMN02368270 | Oyster | 2007 | SC | O3:Kuk | 741 | –/– |
10 | SAMN02368244 | Oyster | 2007 | WA | O3:Kuk | 1148 | –/– |
11 | SAMN02741394 | Oyster | 2010 | MD | Unk | 34 | –/+ |
12 | SAMN02741402 | Oyster | 2010 | MD | Unk | 8 | –/+ |
13 | SAMN02368293 | Stool | 2006 | HI | O4:K4 | 283 | –/– |
14 | SAMN02368297 | Stool | 2006 | MA | O4:K53 | 749 | +/+ |
15 | SAMN02368298 | Stool | 2006 | MA | O1:Kuk | 3 | +/– |
16 | SAMN02368290 | Stool | 2006 | MD | O5:K47 | 1144 | –/+ |
17 | SAMN02368282 | Stool | 2006 | ME | O5:Kuk | 1150 | –/+ |
18 | SAMN03358827 | Stool | 2006 | NY | O10:Kuk | 636 | +/+ |
19 | SAMN03358828 | Stool | 2006 | NY | O3:K6 | 3 | +/– |
20 | SAMN02368284 | Stool | 2006 | NY | O4:Kuk | 36 | +/+ |
21 | SAMN02368283 | Stool | 2006 | NY | O10:Kuk | 809 | –/+ |
22 | SAMN03358830 | Stool | 2006 | NY | O4:K12 | 36 | +/+ |
23 | SAMN02368288 | Stool | 2006 | VA | O8:K41 | Undefinedc | –/– |
24 | SAMN02368286 | Stool | 2006 | VA | O5:K17 | 674 | –/– |
25 | SAMN02368315 | Stool | 2007 | AK | O4:K63 | 36 | +/+ |
26 | SAMN02368321 | Stool | 2007 | GA | O4:K8 | Undefinedc | +/– |
27 | SAMN02368292 | Stool | 2007 | HI | O5:Kuk | 79 | –/– |
28 | SAMN02368291 | Stool | 2007 | HI | O5:K17 | 79 | –/– |
29 | SAMN02368322 | Stool | 2007 | IA | O4:K12 | 36 | +/+ |
30 | SAMN02368323 | Stool | 2007 | IA | O4:K12 | 36 | +/+ |
31 | SAMN02368304 | Stool | 2007 | MD | O3:K56 | 750 | +/+ |
32 | SAMN03358834 | Stool | 2007 | NV | O1:Kuk | 199 | +/+ |
33 | SAMN03358837 | Stool | 2007 | NY | O10:Kuk | 636 | +/+ |
34 | SAMN03358839 | Stool | 2007 | OR | O1:Kuk | 65 | –/+ |
35 | SAMN02368303 | Stool | 2007 | SD | O1:K56 | 775 | +/+ |
36 | SAMN02368318 | Stool | 2007 | VA | O1:K20 | 1132 | +/+ |
37 | SAMN02368312 | Stool | 2007 | WA | O4:K12 | 36 | +/+ |
38 | SAMN02368311 | Stool | 2007 | WA | O4:K12 | 36 | +/+ |
39 | SAMN02368325 | Stool | 2007 | WA | O4:Kuk | 36 | +/+ |
40 | SAMN02368333 | Stool | 2009 | OK | O4:K12 | 36 | +/+ |
41 | SAMN01923894 | Unk | 2006 | USA | Unk | 3 | Not typed |
42 | SAMN01940374 | Water | 2009 | USA | Unk | 1567 | –/– |
43 | SAMN02368278 | Hand | 2006 | LA | O1:Kuk | 744 | –/– |
BioSample IDs are searchable in NCBI's BioSample database; web entries include sample information and links to raw sequence data.
Indicates year/location of collection for environmental isolates and year/location of sample isolation from patient for clinical isolates.
ST is undefined due to an insertion in the recA MLST locus [strains with similar insertions described in (38)].