Table 1. Amino acids and positions within characterized AA5_2 sequences that are implicated in catalysis and substrate preference.
F. graminearum | Corresponding amino acid in | ||||||
---|---|---|---|---|---|---|---|
Catagory | Position | Amino acid | Reported function | Reference(s) | CgrRaOx | CgrAlcOx | PruAA5_2 |
Catalysis | 194 | F | π-π interaction with F227 and W290 | [39] | F | W | Y |
228 | C | C228-Y272 redox cofactor | [3,5,40] | C | C | C | |
272 | Y | C228-Y272 redox cofactor, copper ligand | [3,5,40] | Y | Y | Y | |
441 | F | π-π stacking interaction with Y495 | [3] | F | F | F | |
464 | F | π-π stacking interaction with Y495 | [39] | F | F | F | |
495 | Y | Catalytic tyrosine, copper ligand | [3,5] | Y | Y | Y | |
496 | H | Copper ligand | [3,5] | H | H | H | |
581 | H | Copper ligand | [3,5] | H | H | H | |
Substrate preference | 290 | W | π-π stacking interaction with Y272 and F194, hydrogen bonding with D-galactose | [3,5,16,34,40–42] | Y | F | W |
326 | Qa | Hydrogen bonding with R330 | [34,41] | A | G | D | |
329 | Y | Hydrogen bonding with D-galactose and R330 | [34] | W | M | Y | |
330 | R | Bidentate hydrogen bonds with D-galactose | [34,37,41] | R | F | R | |
405 | Y | Hydrogen bonding with Y495 | [37] | Y | Y | Y | |
406 | Qa | Hydrogen bonding with D-galactose | [34,37] | S | T | E | |
Catalytic efficiency | 383 | Ca | C383S increases Vmax on D-galactose by 1.75x and lowers KM by 3.6x | [35,36] | C | C | S |
436 | Ya | Y436H increases Vmax on D-galactose by 2x | [35] | K | Y | A | |
494 | Va | V494A increases Vmax on D-galactose by 1.75x | [35,36,41] | N | N | V |
Amino acid positions correspond to the archetypal galactose oxidase from Fusarium graminearum.
aAmino acids not fully conserved among AA5_2 sequences from other Fusarium species (Fig A in S1 File).