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. Author manuscript; available in PMC: 2019 Nov 20.
Published in final edited form as: Biochemistry. 2018 Nov 5;57(46):6538–6550. doi: 10.1021/acs.biochem.8b00987

Table 2a.

Table 2A Abundance of Nup358, Bicd2 and Rab6 in human organisms, normalized to Nup358
Human dataset (quality score) Nup358 Rab6 BicD2
Human peptide atlas 2014 (26.0) 1 2.5 0.4
Global proteome machine 2014 (23.9) 1 11.0 0.4
Integrated Human Proteome (15.5) 1 6.4 0.4
Average ratio 1 6.6 ± 4.3 0.4 ± 0
BicD1 BicDRI BicDR2 α&β Tubulin
Human peptide atlas 2014 (26.0) 0.05 0 0.08 307
Global proteome machine 2014 (26.0) 0.11 0 0.05
Integrated human proteome (26.0) 0.03 0 0.06 698
Average ratio 0.06 ± 0.04 0 0.06 ± 0.02 503 ± 200
Table 2B Cytosolic concentration of human Nup358, BicD2 and Rab6
Nup358 G1 phase Rab6 BicD2 BicD1 & BicDR2 α&β Tubulin (Control)
Molecules per cell 32000 211000 13000 4000 1.5*107
Cytosolic conc. (nM) 40 268 16 5 20000
a

Data was obtained from the protein abundance database.55 The protein abundance data quality score is based on the assumption that interacting proteins from a complex have a tendency to have similar abundance, and a large score indicates high data quality. All available data sets from whole human organisms were used, which reported abundance for all three proteins.55,67,68 As a control, the cellular concentration of αβ-tubulin combined was calculated using the same method, which fits well with the cellular concentration of tubulin reported in the literature (e.g., 25 μM and 12−18 μM5860).