. Author manuscript; available in PMC: 2020 May 14.

Published in final edited form as: J Chem Theory Comput. 2019 Apr 4;15(5):3410–3424. doi: 10.1021/acs.jctc.9b00101

Table 1.

Average P_Near values for the normalized covalent labeling score versus RMSD distributions (in triplicate) for the 20 benchmark proteins at various percentages of false negative data points.

	% False Negative Data Points
Residue Type Set	0%	5%	10%	15%	20%	25%	30%	35%	40%	45%	50%
All	0.87	0.88	0.88	0.87	0.87	0.85	0.87	0.85	0.86	0.85	0.81
HRF	0.78	0.78	0.74	0.74	0.70	0.73	0.56	0.55	0.48	0.41	0.36
DEPC	0.60	0.61	0.56	0.53	0.48	0.42	0.41	0.37	0.33	0.18	0.15
Common	0.81	0.81	0.78	0.79	0.77	0.72	0.76	0.71	0.69	0.62	0.53
Most Varied	0.50	0.51	0.38	0.47	0.36	0.30	0.26	0.27	0.16	0.17	0.11
Optimal	0.87	0.87	0.87	0.85	0.86	0.84	0.83	0.81	0.80	0.75	0.73