. Author manuscript; available in PMC: 2020 May 14.

Published in final edited form as: J Chem Theory Comput. 2019 Apr 4;15(5):3410–3424. doi: 10.1021/acs.jctc.9b00101

Table 2.

Average P_Near values for the normalized covalent labeling score versus RMSD distributions (in triplicate) for the 20 benchmark proteins with 35% false negatives at various percentages of false positives.

	% False Positive Data Points
Residue Type Set	0%	5%	10%	15%	20%	25%
All	0.85	0.86	0.61	0.56	0.58	0.57
HRF	0.51	0.40	0.43	0.20	0.25	0.23
DEPC	0.34	0.35	0.28	0.16	0.27	0.26
Common	0.73	0.71	0.62	0.62	0.68	0.61
Most Varied	0.25	0.18	0.06	0.03	0.06	0.09
Optimal	0.81	0.83	0.84	0.40	0.57	0.54