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. Author manuscript; available in PMC: 2020 May 14.
Published in final edited form as: J Chem Theory Comput. 2019 Apr 4;15(5):3410–3424. doi: 10.1021/acs.jctc.9b00101

Table 3.

Average minimum RMSD, top scoring RMSD, and average RMSD of the top 10 scoring for the 20 benchmark proteins generated guided by covalent labeling as compared to those generated without.

Minimum RMSD (Å) Top Scoring RMSD (Å) Avg. RMSD of Top 10 Scoring (Å)
Residue Type Set Rosetta Rosetta + CL Rosetta Rosetta + CL Rosetta Rosetta + CL
all 7.0 6.8 13.1 11.5 12.9 12.1
optimal 7.0 7.1 13.1 12.3 12.9 12.5
common 7.0 7.1 13.1 12.2 12.9 12.6