DL	Deep learning
CNA	Copy number alteration
DAs	Denoising autoencoders
TCGA	The Cancer Genome Atlas
KM	Kaplan-Meier
COX-PH	Cox’s proportion hazard
OR	Odds ratio
AMPK	AMP-activated protein kinase
FDR	False discovery rate
GSEA	Gene sets enrichment analysis
ML	Machine learning
ANN	Artificial neural network
SVM	Support vector machine
ER	Estrogen receptor
miRNA	Micro RNA
CPM	Count per million
FPKM-UQ	Upper quartile fragments per kilobase of transcript per Million mapped reads
SGD	Stochastic gradient descent
KEGG	Kyoto Encyclopedia of Genes and Genomes
GO	Gene Ontology