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SNPs detected in Japanese A4 isolates (n = 52).
| Region | Size (bp) | SNPs | Variable Sites (%) * | Synonymous | Non-Synonymous |
|---|---|---|---|---|---|
| All | 7905 ** | 142 | 1.80 | 57 | 60 |
| E6 | 477 | 6 | 1.26 | 3 | 3 |
| E7 | 297 | 4 | 1.35 | 4 | 0 |
| E1 | 1950 | 17 | 0.87 | 11 | 6 |
| E2 | 1098 | 17 | 1.55 | 4 | 13 |
| E4 | 288 | 7 | 2.43 | 4 | 3 |
| E5 | 252 | 9 | 3.57 | 1 | 8 |
| NC | 134 | 10 | 7.46 | ||
| L2 | 1422 | 37 | 2.60 | 16 | 21 |
| L1 | 1596 | 20 | 1.25 | 14 | 6 |
| LCR | 832 | 22 | 2.64 |
* The percentage of variable sites in each region; ** the length of the sequence of AF534061; NC—non-coding region between E5 and L2; LCR—long control region.
