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. 2019 Apr 14;11(4):533. doi: 10.3390/cancers11040533

Table 2.

Commonly used molecules inhibiting autophagy. Small molecules that have been identified as inhibitors of autophagy and the main mechanism of action.

Compound Autophagy Inhibitors
Mechanism of Action
Bafilomycin A1 Inhibitor of v-ATPase, inhibition of lysosomal acidification
Concanamycin A Inhibitor of v-ATPase, inhibition of lysosomal acidification
Azithromycin Inhibitor of v-ATPase, inhibition of lysosomal acidification
3-Methyladenine (3-MA) Inhibitor of class III PI3K
Chloroquine (CQ) Neutralizes the acidic pH of intracellular vesicles
Hydroxy-chloroquine (HCQ) CQ derivative-Neutralizes the acidic pH of intracellular vesicles
Lys05 CQ derivative-alter the acidification of the lysosomes
SAR405 Kinase inhibitor of Vps18 and Vps34
SBI-0206965 Inhibitor of ULK1
Verteporfin Inhibit acidification of lysosomes
Clomipramine Inhibit acidification of lysosomes
desmethylclomipramine (DCMI) Inhibit Autophagosome-Lysosome fusion
Paclitaxel Microtubule stabilizer- inhibits phosphorylation of VPS34 at T159
SAHA Interact in autophagosome-lysosome fusion
Monensin Inhibit autophagosome-lysosome fusion
Sputin-1 Inhibits the activity of ubiquitin-specific peptidases, USP10 and USP13
SP600125 Inhibition of JNK—reduction of Beclin-1
U0126 Inhibitor of MEK1 and MEK2
Wortmannin PI3K inhibitor
LY294002 PI3K inhibitor
SB202190 Cross-inhibition of the PI3K/mTOR and MAPKs pathway
SB203580 Inhibit autophagy by interfering with the trafficking of Atg9
MHY1485 mTOR activator